| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 204 | 2020 |
| Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ... Cell 183 (1), 197-210. e32, 2020 | 165 | 2020 |
| Antimony: a modular model definition language LP Smith, FT Bergmann, D Chandran, HM Sauro Bioinformatics 25 (18), 2452-2454, 2009 | 135 | 2009 |
| Tellurium: an extensible python-based modeling environment for systems and synthetic biology K Choi, JK Medley, M König, K Stocking, L Smith, S Gu, HM Sauro Biosystems 171, 74-79, 2018 | 127 | 2018 |
| Comparing likelihood and Bayesian coalescent estimation of population parameters MK Kuhner, LP Smith Genetics 175 (1), 155-165, 2007 | 115 | 2007 |
| The systems biology markup language (SBML): language specification for level 3 version 2 core release 2 M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ... Journal of integrative bioinformatics 16 (2), 20190021, 2019 | 109 | 2019 |
| The Systems Biology Markup Language (SBML): language specification for level 3 version 1 core M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ... Journal of integrative bioinformatics 12 (2), 382-549, 2015 | 90 | 2015 |
| The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 20170081, 2018 | 82 | 2018 |
| The systems biology markup language (SBML): Language specification for level 3 version 1 core L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ... Nature Precedings, 1-1, 2010 | 78 | 2010 |
| Protein engineering strategies for designing more stable hemoglobin-based blood substitutes JS Olson, RF Eich, LP Smith, JJ Warren, BC Knowles Artificial Cells, Blood Substitutes, and Biotechnology 25 (1-2), 227-241, 1997 | 69 | 1997 |
| Tellurium notebooks—an environment for reproducible dynamical modeling in systems biology JK Medley, K Choi, M König, L Smith, S Gu, J Hellerstein, SC Sealfon, ... PLoS computational biology 14 (6), e1006220, 2018 | 59 | 2018 |
| A reappraisal of how to build modular, reusable models of biological systems ML Neal, MT Cooling, LP Smith, CT Thompson, HM Sauro, BE Carlson, ... PLoS computational biology 10 (10), e1003849, 2014 | 57 | 2014 |
| SBML level 3 package: hierarchical model composition, version 1 release 3 LP Smith, M Hucka, S Hoops, A Finney, M Ginkel, CJ Myers, I Moraru, ... Journal of integrative bioinformatics 12 (2), 603-659, 2015 | 51 | 2015 |
| The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE) D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ... Journal of integrative bioinformatics 17 (2-3), 20200005, 2020 | 31 | 2020 |
| SBML level 3 package: groups, version 1 release 1 M Hucka, LP Smith Journal of integrative bioinformatics 13 (3), 8-29, 2016 | 29 | 2016 |
| Apoglobin stability is the major factor governing both cell-free and in vivo expression of holomyoglobin*♦ PP Samuel, LP Smith, GN Phillips, JS Olson Journal of Biological Chemistry 290 (39), 23479-23495, 2015 | 28 | 2015 |
| Systems biology markup language (SBML) level 2 version 5: structures and facilities for model definitions M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novere, ... Journal of integrative bioinformatics 12 (2), 731-901, 2015 | 28 | 2015 |
| LAMARC, Version 2. 0 MK Kuhner, J Yamato, P Beerli, LP Smith, E Rynes, E Walkup, C Li, ... University of Washington, Seattle.[Online.] Available at evolution. gs …, 2005 | 28 | 2005 |
| Tellurium: A python based modeling and reproducibility platform for systems biology K Choi, JK Medley, C Cannistra, M König, L Smith, K Stocking, HM Sauro BioRxiv, 054601, 2016 | 22 | 2016 |
| Systems biology markup language (SBML) M Hucka, R Jung Neuroinformatics 6 (4), 257-277, 2017 | 21 | 2017 |
