| The tomato genome sequence provides insights into fleshy fruit evolution Tomato Genome Consortium Nature 485 (7400), 635, 2012 | 3186 | 2012 |
| Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing 100 Tomato Genome Sequencing Consortium, S Aflitos, E Schijlen, ... The Plant Journal 80 (1), 136-148, 2014 | 433 | 2014 |
| Computational pan-genomics: status, promises and challenges Briefings in Bioinformatics 19 (1), 118-135, 2016 | 324 | 2016 |
| PyCogent: a toolkit for making sense from sequence R Knight, P Maxwell, A Birmingham, J Carnes, JG Caporaso, BC Easton, ... Genome Biol 8 (8), R171, 2007 | 226 | 2007 |
| Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses R van Velzen, R Holmer, F Bu, L Rutten, A van Zeijl, W Liu, L Santuari, ... Proceedings of the National Academy of Sciences 115 (20), E4700-E4709, 2018 | 221 | 2018 |
| Evolutionary rates vary among rRNA structural elements S Smit, J Widmann, R Knight Nucleic acids research 35 (10), 3339-3354, 2007 | 139 | 2007 |
| Coping with living in the soil: the genome of the parthenogenetic springtail Folsomia candida A Faddeeva-Vakhrusheva, K Kraaijeveld, MFL Derks, SY Anvar, ... BMC genomics 18 (1), 493, 2017 | 112 | 2017 |
| From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal S Smit, K Rother, J Heringa, R Knight RNA 14 (3), 410-416, 2008 | 100 | 2008 |
| Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome LA Shearer, LK Anderson, H de Jong, S Smit, JL Goicoechea, BA Roe, ... G3: Genes| Genomes| Genetics 4 (8), 1395-1405, 2014 | 93 | 2014 |
| The genome of winter moth (Operophtera brumata) provides a genomic perspective on sexual dimorphism and phenology MFL Derks, S Smit, L Salis, E Schijlen, A Bossers, C Mateman, AS Pijl, ... Genome biology and evolution 7 (8), 2321-32, 2015 | 83 | 2015 |
| Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories S Smit, M Yarus, R Knight RNA 12 (1), 1-14, 2006 | 80 | 2006 |
| Making the difference: integrating structural variation detection tools K Lin, S Smit, G Bonnema, G Sanchez-Perez, D de Ridder Briefings in bioinformatics 16 (5), 852-864, 2014 | 71 | 2014 |
| PanTools: representation, storage and exploration of pan-genomic data S Sheikhizadeh, ME Schranz, M Akdel, D de Ridder, S Smit Bioinformatics 32 (17), i487-i493, 2016 | 70 | 2016 |
| Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids R Knight, H De Sterck, R Markel, S Smit, A Oshmyansky, M Yarus Nucleic acids research 33 (18), 5924-5935, 2005 | 70 | 2005 |
| Gene family evolution reflects adaptation to soil environmental stressors in the genome of the collembolan Orchesella cincta A Faddeeva-Vakhrusheva, MFL Derks, SY Anvar, V Agamennone, ... Genome biology and evolution 8 (7), 2106-2117, 2016 | 69 | 2016 |
| Enhancing faba bean (Vicia faba L.) genome resources JW Cooper, MH Wilson, MFL Derks, S Smit, KJ Kunert, C Cullis, CH Foyer Journal of Experimental Botany 68 (8), 1941-1953, 2017 | 53 | 2017 |
| Comparative genomics of Beauveria bassiana: uncovering signatures of virulence against mosquitoes CA Valero-Jiménez, L Faino, D Spring, S Smit, BJ Zwaan, JAL van Kan BMC genomics 17 (1), 1-11, 2016 | 52 | 2016 |
| Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics JG Caporaso, S Smit, BC Easton, L Hunter, GA Huttley, R Knight BMC evolutionary biology 8 (1), 327, 2008 | 38 | 2008 |
| Do universal codon-usage patterns minimize the effects of mutation and translation error? R Marquez, S Smit, R Knight Genome biology 6 (11), R91, 2005 | 35 | 2005 |
| RNASTAR: An RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs J Widmann, J Stombaugh, D McDonald, J Chocholousova, P Gardner, ... RNA 18 (7), 1319-1327, 2012 | 33 | 2012 |
