| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1054 | 2021 |
| Integrating Hi-C links with assembly graphs for chromosome-scale assembly J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ... PLoS computational biology 15 (8), e1007273, 2019 | 580 | 2019 |
| De novo assembly of the cattle reference genome with single-molecule sequencing BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ... Gigascience 9 (3), giaa021, 2020 | 371 | 2020 |
| Scaffolding of long read assemblies using long range contact information J Ghurye, M Pop, S Koren, D Bickhart, CS Chin BMC genomics 18 (1), 1-11, 2017 | 201 | 2017 |
| Metagenomic Assembly: Overview, Challenges and Applications J Ghurye, V Cepeda-Espinoza, M Pop The Yale Journal of Biology and Medicine 89 (3), 353-362, 2016 | 169 | 2016 |
| Chromosome-scale, haplotype-resolved assembly of human genomes S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ... Nature biotechnology 39 (3), 309-312, 2021 | 137* | 2021 |
| Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ... Briefings in bioinformatics 20 (4), 1140-1150, 2019 | 134 | 2019 |
| Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle WY Low, R Tearle, R Liu, S Koren, A Rhie, DM Bickhart, BD Rosen, ... Nature Communications 11 (1), 2071, 2020 | 91 | 2020 |
| Targeting SWI/SNF ATPases in enhancer-addicted prostate cancer L Xiao, A Parolia, Y Qiao, P Bawa, S Eyunni, R Mannan, SE Carson, ... Nature 601 (7893), 434-439, 2022 | 89 | 2022 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 79 | 2022 |
| Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation DM Bickhart, M Watson, S Koren, K Panke-Buisse, LM Cersosimo, ... Genome biology 20 (1), 1-18, 2019 | 75 | 2019 |
| Improved reference genome of the arboviral vector Aedes albopictus U Palatini, R Masri, LV Cosme, S Koren, F Thibaud-Nissen, JK Biedler, ... Genome Biology 21 (215), 2020 | 73 | 2020 |
| Modern technologies and algorithms for scaffolding assembled genomes J Ghurye, M Pop PLoS computational biology 15 (6), e1006994, 2019 | 57 | 2019 |
| A chromosome-scale assembly of the major African malaria vector Anopheles funestus J Ghurye, S Koren, ST Small, S Redmond, P Howell, AM Phillippy, ... Gigascience 8 (6), giz063, 2019 | 49 | 2019 |
| New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes R Liu, WY Low, R Tearle, S Koren, J Ghurye, A Rhie, AM Phillippy, ... BMC genomics 20 (1), 1-11, 2019 | 31 | 2019 |
| A framework to model human behavior at large scale during natural disasters J Ghurye, G Krings, V Frias-Martinez 2016 17th IEEE International Conference on Mobile Data Management (MDM) 1, 18-27, 2016 | 30 | 2016 |
| MetaCarvel: linking assembly graph motifs to biological variants J Ghurye, T Treangen, M Fedarko, WJ Hervey, M Pop Genome biology 20 (1), 1-14, 2019 | 18 | 2019 |
| A critical assessment of gene catalogs for metagenomic analysis S Commichaux, N Shah, J Ghurye, A Stoppel, JA Goodheart, GG Luque, ... Bioinformatics 37 (18), 2848-2857, 2021 | 16 | 2021 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 10 | 2018 |
| Better identification of repeats in metagenomic scaffolding J Ghurye, M Pop Algorithms in Bioinformatics: 16th International Workshop, WABI 2016, Aarhus …, 2016 | 8 | 2016 |
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerified email at umd.edu
