Follow
Vladimir Farafonov
Vladimir Farafonov
Verified email at karazin.ua
Title
Cited by
Cited by
Year
Disordered protein-graphene oxide co-assembly and supramolecular biofabrication of functional fluidic devices
Y Wu, BO Okesola, J Xu, I Korotkin, A Berardo, I Corridori, ...
Nature communications 11 (1), 1182, 2020
502020
All-atom molecular dynamics simulations of entire virus capsid reveal the role of ion distribution in capsid’s stability
E Tarasova, V Farafonov, R Khayat, N Okimoto, TS Komatsu, M Taiji, ...
The journal of physical chemistry letters 8 (4), 779-784, 2017
482017
Complete virus capsid at all-atom resolution: Simulations using molecular dynamics and hybrid molecular dynamics/hydrodynamics methods reveal semipermeable membrane function
E Tarasova, I Korotkin, V Farafonov, S Karabasov, D Nerukh
Journal of Molecular Liquids 245, 109-114, 2017
282017
Character of Localization and Microenvironment of Solvatochromic Reichardt’s Betaine Dye in Sodium n-Dodecyl Sulfate and Cetyltrimethylammonium Bromide …
VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan
Langmuir 33 (33), 8342-8352, 2017
282017
Developing and validating a set of all-atom potential models for sodium dodecyl sulfate
VS Farafonov, AV Lebed
Journal of Chemical Theory and Computation 13 (6), 2742-2750, 2017
272017
A hybrid molecular dynamics/fluctuating hydrodynamics method for modelling liquids at multiple scales in space and time
I Korotkin, S Karabasov, D Nerukh, A Markesteijn, A Scukins, V Farafonov, ...
The Journal of Chemical Physics 143 (1), 2015
242015
MS2 bacteriophage capsid studied using all-atom molecular dynamics
VS Farafonov, D Nerukh
Interface Focus 9 (3), 20180081, 2019
232019
Two-phase flow analogy as an effective boundary condition for modelling liquids at atomistic resolution
I Korotkin, D Nerukh, E Tarasova, V Farafonov, S Karabasov
Journal of Computational Science 17, 446-456, 2016
192016
Molecular dynamics simulation study of cetylpyridinum chloride and cetyltrimethylammonium bromide micelles
VS Farafonov, AV Lebed
Kharkiv University Bulletin. Chemical Series, 25-30, 2016
152016
Association of novel monomethine cyanine dyes with bacteriophage MS2: A fluorescence study
K Vus, U Tarabara, Z Balklava, D Nerukh, M Stich, A Laguta, ...
Journal of Molecular Liquids 302, 112569, 2020
142020
In search of an optimal acid-base indicator for examining surfactant micelles: Spectrophotometric studies and molecular dynamics simulations
NO Mchedlov-Petrossyan, VS Farafonov, TA Cheipesh, SV Shekhovtsov, ...
Colloids and Surfaces A: Physicochemical and Engineering Aspects 565, 97-107, 2019
122019
In Vitro and In Silico Investigation of Water-Soluble Fullerenol C60(OH)24: Bioactivity and Biocompatibility
VV Sharoyko, NR Iamalova, SV Ageev, AA Meshcheriakov, GO Iurev, ...
The Journal of Physical Chemistry B 125 (32), 9197-9212, 2021
112021
Details of charge distribution in stable viral capsid
E Tarasova, V Farafonov, M Taiji, D Nerukh
Journal of Molecular Liquids 265, 585-591, 2018
112018
Examining surfactant micelles via acid-base indicators: Revisiting the pioneering Hartley–Roe 1940 study by molecular dynamics modeling
NO Mchedlov-Petrossyan, VS Farafonov, AV Lebed
Journal of Molecular Liquids 264, 683-690, 2018
112018
Estimation of Nanoparticle’s Surface Electrostatic Potential in Solution Using Acid–Base Molecular Probes. III. Experimental Hydrophobicity/Hydrophilicity and Charge …
N Vodolazkaya, M Nikolskaya, A Laguta, V Farafonov, Z Balklava, M Stich, ...
The Journal of Physical Chemistry B 126 (41), 8166-8176, 2022
102022
Solvatochromic betaine dyes of different hydrophobicity in ionic surfactant micelles: Molecular dynamics modeling of location character
VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan
Colloids and Surfaces A: Physicochemical and Engineering Aspects 538, 583-592, 2018
82018
Protein–ligand dissociation rate constant from all-atom simulation
E Maximova, EB Postnikov, AI Lavrova, V Farafonov, D Nerukh
The Journal of Physical Chemistry Letters 12 (43), 10631-10636, 2021
62021
Graphene oxide of extra high oxidation: A wafer for loading guest molecules
AOE Abdelhalim, VV Sharoyko, SV Ageev, VS Farafonov, DA Nerukh, ...
The Journal of Physical Chemistry Letters 12 (41), 10015-10024, 2021
62021
Computing pKa Shifts Using Traditional Molecular Dynamics: Example of Acid–Base Indicator Dyes in Organized Solutions
VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan
Journal of Chemical Theory and Computation 16 (9), 5852-5865, 2020
62020
Solvatochromic Reichardt’s dye in micelles of sodium cetyl sulfate: MD modeling of location character and hydration
VS Farafonov, AV Lebed, NO Mchedlov-Petrossyan
Kharkiv University Bulletin. Chemical Series, 5-11, 2017
62017
The system can't perform the operation now. Try again later.
Articles 1–20