Jaap Heringa

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Anton FeenstraAssistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU UniversityVerified email at vu.nl
Sanne AbelnProfessor of AI Technology for Life, Utrecht UniversityVerified email at uu.nl
Walter PirovanoResearch project manager, VU UniversityVerified email at vu.nl
des higginsUniversity College DublinVerified email at ucd.ie
Cedric NotredamePrincipal Investigator, Centre For Genomic Regulation CRG, BarcelonaVerified email at crg.eu
Nicola BonzanniVU University AmsterdamVerified email at vu.nl
William R TaylorDivision head, Mathematical Biology, National Institute for Medical Research, UKVerified email at nimr.mrc.ac.uk
Kuang LinNDPH, Oxford UniversityVerified email at ndph.ox.ac.uk
Punto BawonoThe Centre for Integrative Bioinformatics VU (IBIVU)Verified email at vu.nl
Jens KleinjungSosei HeptaresVerified email at jkleinj.eu
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Qingzhen Hou3BIO-BioInfo - BioModeling, BioInformatics & BioProcesses, Université Libre de BruxellesVerified email at ulb.ac.be
Elena MarchioriRadboud UniversityVerified email at cs.ru.nl
Gerrit A Meijerprofessor of oncologic pathology, Netherlands Cancer Institute, University Medical Center UtrechtVerified email at nki.nl
Mohammed El-KebirAssistant ProfessorVerified email at illinois.edu
Wan FokkinkProfessor of Computer Science, Vrije Universiteit AmsterdamVerified email at vu.nl
Ali MaySenior Associate Scientist at DSMVerified email at vu.nl
Remond J.A. FijnemanNetherlands Cancer Institute, Amsterdam, The NetherlandsVerified email at nki.nl
Annika JacobsenBioSemantics Group, Human Genetics, Leiden University Medical CenterVerified email at lumc.nl
Henri BalVU University AmsterdamVerified email at cs.vu.nl

Jaap Heringa

Professor of Bioinformatics, Vrije Universiteit Amsterdam

Verified email at vu.nl

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The FAIR Guiding Principles for scientific data management and stewardship MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ... Scientific data 3 (1), 1-9, 2016	9960	2016
T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000	8299	2000
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information VA Simossis, J Heringa Nucleic acids research 33 (suppl_2), W289-W294, 2005	548	2005
An analysis of protein domain linkers: their classification and role in protein folding RA George, J Heringa Protein Engineering, Design and Selection 15 (11), 871-879, 2002	476	2002
A simple and fast secondary structure prediction method using hidden neural networks K Lin, VA Simossis, WR Taylor, J Heringa Bioinformatics 21 (2), 152-159, 2005	348	2005
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid TJ Gibson, JD Thompson, J Heringa FEBS letters 324 (3), 361-366, 1993	259	1993
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3: 160018 MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...	232	2016
General secretion signal for the mycobacterial type VII secretion pathway MH Daleke, R Ummels, P Bawono, J Heringa, ... Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012	204	2012
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment J Heringa Computers & chemistry 23 (3-4), 341-364, 1999	196	1999
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils D Langosch, J Heringa Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998	189	1998
The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3, 160018 MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ... As Open as Possible, as Closed as Necessary’–Managing legal and owner 3, 2016	183	2016
FAIR principles: interpretations and implementation considerations A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ... Data Intelligence 2 (1-2), 10-29, 2020	181	2020
Tracking repeats using significance and transitivity R Szklarczyk, J Heringa Bioinformatics 20 (suppl_1), i311-i317, 2004	160	2004
Protein secondary structure prediction W Pirovano, J Heringa Data Mining Techniques for the Life Sciences, 327-348, 2010	143	2010
Homology-extended sequence alignment VA Simossis, J Kleinjung, J Heringa Nucleic acids research 33 (3), 816-824, 2005	140	2005
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins W Pirovano, KA Feenstra, J Heringa Bioinformatics 24 (4), 492-497, 2008	133	2008
The ontogeny of a dominance hierarchy in colonies of the bumblebee Bombus terrestris (Hymenoptera, Apidae) A Van Doorn, J Heringa Insectes soc 33 (3), 25, 1986	133	1986
Side-chain clusters in protein structures and their role in protein folding J Heringa, P Argos Journal of molecular biology 220 (1), 151-171, 1991	125	1991
SnapDRAGON: a method to delineate protein structural domains from sequence data RA George, J Heringa Journal of molecular biology 316 (3), 839-851, 2002	120	2002
Three-dimensional domain duplication, swapping and stealing J Heringa, WR Taylor Current opinion in structural biology 7 (3), 416-421, 1997	119	1997

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