Jaap Heringa

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Anton FeenstraAssistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU UniversityVerified email at vu.nl
Sanne AbelnProfessor of AI Technology for Life, Utrecht UniversityVerified email at uu.nl
Walter PirovanoResearch project manager, VU UniversityVerified email at vu.nl
des higginsUniversity College DublinVerified email at ucd.ie
Cedric NotredameCentre for Genomic Regulation, SpainVerified email at crg.eu
Punto BawonoThe Centre for Integrative Bioinformatics VU (IBIVU)Verified email at vu.nl
William R TaylorDivision head, Mathematical Biology, National Institute for Medical Research, UKVerified email at nimr.mrc.ac.uk
Nicola BonzanniVU University AmsterdamVerified email at vu.nl
Gerrit A Meijerprofessor of oncologic pathology, Netherlands Cancer Institute, University Medical Center UtrechtVerified email at nki.nl
Qingzhen Hou3BIO-BioInfo - BioModeling, BioInformatics & BioProcesses, Université Libre de BruxellesVerified email at ulb.ac.be
Kuang LinNDPH, Oxford UniversityVerified email at ndph.ox.ac.uk
Jens KleinjungNxera TherapeuticsVerified email at jkleinj.eu
Wan FokkinkProfessor of Computer Science, Vrije Universiteit AmsterdamVerified email at vu.nl
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Elena MarchioriRadboud UniversityVerified email at cs.ru.nl
Mohammed El-KebirAssistant ProfessorVerified email at illinois.edu
Remond J.A. FijnemanNetherlands Cancer Institute, Amsterdam, The NetherlandsVerified email at nki.nl
Ali MayData Science Lead at dsm-firmenichVerified email at dsm-firmenich.com
Annika JacobsenBioSemantics Group, Human Genetics, Leiden University Medical CenterVerified email at lumc.nl
Toby GibsonEMBLVerified email at embl.de

Jaap Heringa

Professor of Bioinformatics, Vrije Universiteit Amsterdam

Verified email at vu.nl

Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The FAIR Guiding Principles for scientific data management and stewardship MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ... Scientific data 3 (1), 1-9, 2016	14645	2016
T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000	8765	2000
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information VA Simossis, J Heringa Nucleic acids research 33 (suppl_2), W289-W294, 2005	583	2005
An analysis of protein domain linkers: their classification and role in protein folding RA George, J Heringa Protein engineering 15 (11), 871-879, 2002	535	2002
A simple and fast secondary structure prediction method using hidden neural networks K Lin, VA Simossis, WR Taylor, J Heringa Bioinformatics 21 (2), 152-159, 2005	362	2005
FAIR principles: interpretations and implementation considerations A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ... Data intelligence 2 (1-2), 10-29, 2020	295	2020
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid TJ Gibson, JD Thompson, J Heringa FEBS letters 324 (3), 361-366, 1993	264	1993
General secretion signal for the mycobacterial type VII secretion pathway MH Daleke, R Ummels, P Bawono, J Heringa, ... Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012	228	2012
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment J Heringa Computers & chemistry 23 (3-4), 341-364, 1999	199	1999
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils D Langosch, J Heringa Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998	194	1998
Tracking repeats using significance and transitivty. R Szklarczyk, J Heringa Bioinformatics 20 (Suppl 1), i311-i317, 2004	165	2004
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016) M Wilkinson, M Dumontier, I Aalbersberg, G Appleton, M Axton, A Baak, ...	158	2016
Protein secondary structure prediction W Pirovano, J Heringa Data Mining Techniques for the Life Sciences, 327-348, 2010	154	2010
Homology-extended sequence alignment VA Simossis, J Kleinjung, J Heringa Nucleic acids research 33 (3), 816-824, 2005	143	2005
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins W Pirovano, KA Feenstra, J Heringa Bioinformatics 24 (4), 492-497, 2008	140	2008
The ontogeny of a dominance hierarchy in colonies of the bumblebee Bombus terrestris (Hymenoptera, Apidae) A Van Doorn, J Heringa Insectes soc 33 (3), 25, 1986	138	1986
Side-chain clusters in protein structures and their role in protein folding J Heringa, P Argos Journal of molecular biology 220 (1), 151-171, 1991	126	1991
PhyloPars: estimation of missing parameter values using phylogeny J Bruggeman, J Heringa, BW Brandt Nucleic acids research 37 (suppl_2), W179-W184, 2009	125	2009
SnapDRAGON: a method to delineate protein structural domains from sequence data RA George, J Heringa Journal of molecular biology 316 (3), 839-851, 2002	122	2002
Addendum: The FAIR Guiding Principles for scientific data management and stewardship MD Wilkinson, M Dumontier, I Jan Aalbersberg, G Appleton, M Axton, ... Scientific data 6 (1), 6, 2019	118	2019

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