| New microRNAs in Drosophila—birth, death and cycles of adaptive evolution Y Lyu, Y Shen, H Li, Y Chen, L Guo, Y Zhao, E Hungate, S Shi, CI Wu, ... PLoS genetics 10 (1), 2014 | 56 | 2014 |
| Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data A Blumberg, Y Zhao, YF Huang, N Dukler, EJ Rice, AG Chivu, K Krumholz, ... BMC biology 19, 1-17, 2021 | 52 | 2021 |
| Redundant and incoherent regulations of multiple phenotypes suggest microRNAs’ role in stability control Z Liufu, Y Zhao, L Guo, G Miao, J Xiao, Y Lyu, Y Chen, S Shi, T Tang, ... Genome research 27 (10), 1665-1673, 2017 | 42 | 2017 |
| Gene regulatory network stabilized by pervasive weak repressions-microRNA functions revealed by the May-Wigner theory Y Chen, Y Shen, P Lin, D Tong, Y Zhao, S Allesina, X Shen, CI Wu National Science Review, 2019 | 40* | 2019 |
| Weak Regulation of Many Targets Is Cumulatively Powerful—An Evolutionary Perspective on microRNA Functionality Y Zhao, X Shen, T Tang, CI Wu Molecular biology and evolution 34 (12), 3041-3046, 2017 | 33 | 2017 |
| Run or Die in the Evolution of New MicroRNAs — Testing the Red Queen Hypothesis on De Novo New Genes Y Zhao, GA Lu, H Yang, P Lin, Z Liufu, T Tang, J Xu Molecular Biology and Evolution, 2020 | 15* | 2020 |
| Characterization of gene expression signatures for the identification of cellular heterogeneity in the developing mammary gland S Henry, MC Trousdell, SL Cyrill, Y Zhao, M Feigman, JM Bouhuis, ... Journal of mammary gland biology and neoplasia 26 (1), 43-66, 2021 | 13 | 2021 |
| RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription A Abuhashem, AG Chivu, Y Zhao, EJ Rice, A Siepel, CG Danko, ... Genes & Development 36 (13-14), 770-789, 2022 | 12 | 2022 |
| Death of new microRNA genes in Drosophila via gradual loss of fitness advantages GA Lu, Y Zhao, H Yang, A Lan, S Shi, Z Liufu, Y Huang, T Tang, J Xu, ... Genome research 28 (9), 1309-1318, 2018 | 11 | 2018 |
| Regulation of Large Number of Weak Targets—New Insights from Twin-microRNAs Y Zhao, P Lin, Z Liufu, H Yang, Y Lyu, X Shen, CI Wu, T Tang Genome biology and evolution 10 (5), 1255-1264, 2018 | 11 | 2018 |
| On the possibility of death of new genes–evidence from the deletion of de novo microRNAs GA Lu, Y Zhao, Z Liufu, CI Wu BMC Genomics 19 (1), 388, 2018 | 9 | 2018 |
| Deconvolution of Expression for Nascent RNA Sequencing Data (DENR) Highlights Pre-RNA Isoform Diversity in Human Cells Y Zhao, NE Dukler, G Barshad, S Toneyan, CG Danko, A Siepel Bioinformatics 37 (24), 4727–4736, 2021 | 7 | 2021 |
| Canalization of phenotypes–When the transcriptome is constantly but weakly perturbed GA Lu, J Zhang, Y Zhao, Q Chen, P Lin, T Tang, Z Tang, H Wen, Z Liufu, ... Molecular Biology and Evolution, 2023 | 4* | 2023 |
| Plasma cells in human pancreatic ductal adenocarcinoma secrete antibodies against self-antigens M Yao, J Preall, JTH Yeh, D Pappin, P Cifani, Y Zhao, S Shen, P Moresco, ... JCI insight 8 (21), e172449, 2023 | 3 | 2023 |
| Weak Regulation of Many Targets Is Cumulatively Powerful—A Reply to Seitz on microRNA Functionality Y Zhao, X Shen, T Tang, CI Wu Molecular biology and evolution 36 (7), 1598-1599, 2019 | 3 | 2019 |
| Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells Y Zhao, L Liu, R Hassett, A Siepel Nucleic Acids Research, gkad843, 2023 | 2 | 2023 |
| Gene expression as phenotype-Many small-step changes leading to little long-term phenotypic evolution P Lin, GA Lu, Z Liufu, YX Zhao, Y Ruan, CI Wu, H Wen bioRxiv, 2022.06. 24.497468, 2022 | 1 | 2022 |
| Abstract A079: Loss of BPTF restores estrogen-regulated programs and suppress metastatic development of mammary tumors C Chen, MF Ciccone, M Trousdell, D Chatterjee, Y Zhao, SM Lewis, ... Cancer Research 84 (3_Supplement_1), A079-A079, 2024 | | 2024 |
| DNA-sequence and epigenomic determinants of local rates of transcription elongation L Liu, Y Zhao, A Siepel bioRxiv, https://doi.org/10.1101/2023.12.21.57293, 2023 | | 2023 |
Zhongqi Liufu生物岛实验室Verified email at mail.sysu.edu.cn
