Beth A Cimini
Beth A Cimini
Broad Institute
Verified email at - Homepage
Cited by
Cited by
Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system
B Chen, LA Gilbert, BA Cimini, J Schnitzbauer, W Zhang, GW Li, J Park, ...
Cell 155 (7), 1479-1491, 2013
CellProfiler 3.0: Next-generation image processing for biology
C McQuin, A Goodman, V Chernyshev, L Kamentsky, BA Cimini, ...
PLoS biology 16 (7), e2005970, 2018
Genetic and transcriptional evolution alters cancer cell line drug response
U Ben-David, B Siranosian, G Ha, H Tang, Y Oren, K Hinohara, ...
Nature 560 (7718), 325-330, 2018
CellProfiler 4: improvements in speed, utility and usability
DR Stirling, MJ Swain-Bowden, AM Lucas, AE Carpenter, BA Cimini, ...
BMC Bioinformatics 22 (1), 1-11, 2021
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl
JC Caicedo, A Goodman, KW Karhohs, BA Cimini, J Ackerman, ...
Nature methods 16 (12), 1247-1253, 2019
Visualization of actin filaments and monomers in somatic cell nuclei
BJ Belin, BA Cimini, EH Blackburn, RD Mullins
Molecular biology of the cell 24 (7), 982-994, 2013
Common limitations of image processing metrics: A picture story
A Reinke, MD Tizabi, CH Sudre, M Eisenmann, T Rädsch, M Baumgartner, ...
arXiv preprint arXiv:2104.05642, 2021
Metrics reloaded: recommendations for image analysis validation
L Maier-Hein, A Reinke, P Godau, MD Tizabi, F Buettner, E Christodoulou, ...
Nature methods, 1-18, 2024
CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis
DR Stirling, AE Carpenter, BA Cimini
Bioinformatics 37 (21), 3992-3994, 2021
Open-source deep-learning software for bioimage segmentation
AM Lucas, PV Ryder, B Li, BA Cimini, KW Eliceiri, AE Carpenter
Molecular Biology of the Cell 32 (9), 823-829, 2021
Morphology and gene expression profiling provide complementary information for mapping cell state
GP Way, T Natoli, A Adeboye, L Litichevskiy, A Yang, X Lu, JC Caicedo, ...
Cell Systems, 2022
Control of osteocyte dendrite formation by Sp7 and its target gene osteocrin
JS Wang, T Kamath, CM Mazur, F Mirzamohammadi, D Rotter, H Hojo, ...
Nature Communications 12 (1), 1-20, 2021
High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations
M Haghighi, JC Caicedo, BA Cimini, AE Carpenter, S Singh
Nature Methods, 1-8, 2022
Optimizing the Cell Painting assay for image-based profiling
BA Cimini, SN Chandrasekaran, M Kost-Alimova, L Miller, A Goodale, ...
Nature Protocols, 1-44, 2023
In situ visualization of telomere elongation patterns in human cells
ME Diolaiti, BA Cimini, R Kageyama, FA Charles, BA Stohr
Nucleic acids research 41 (18), e176-e176, 2013
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ...
bioRxiv, 2023.02. 17.528834, 2023
Scientific Community Image Forum: A discussion forum for scientific image software
CT Rueden, J Ackerman, ET Arena, J Eglinger, BA Cimini, A Goodman, ...
PLoS biology 17 (6), e3000340, 2019
Role of acetylcholine in nitric oxide production in the salamander retina
BA Cimini, CE Strang, VE Wotring, KT Keyser, WD Eldred
Journal of Comparative Neurology 507 (6), 1952-1963, 2008
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations
SN Chandrasekaran, BA Cimini, A Goodale, L Miller, M Kost-Alimova, ...
bioRxiv, 2022
ImageJ and CellProfiler: Complements in Open‐Source Bioimage Analysis
ETA Dobson, B Cimini, AH Klemm, C Wählby, AE Carpenter, KW Eliceiri
Current Protocols 1 (5), e89, 2021
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Articles 1–20