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José Alfredo Samaniego Castruita
José Alfredo Samaniego Castruita
Bioinformatician, Hvidovre Hospital
Verified email at regionh.dk - Homepage
Title
Cited by
Cited by
Year
Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
19022014
Comparative genomics reveals insights into avian genome evolution and adaptation
G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ...
Science 346 (6215), 1311-1320, 2014
10422014
The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils
ME Allentoft, M Collins, D Harker, J Haile, CL Oskam, ML Hale, ...
Proceedings of the Royal Society B: Biological Sciences 279 (1748), 4724-4733, 2012
7452012
Pathogens and host immunity in the ancient human oral cavity
C Warinner, JFM Rodrigues, R Vyas, C Trachsel, N Shved, J Grossmann, ...
Nature genetics 46 (4), 336-344, 2014
6652014
Single‐tube library preparation for degraded DNA
C Carøe, S Gopalakrishnan, L Vinner, SST Mak, MHS Sinding, ...
Methods in Ecology and Evolution 9 (2), 410-419, 2018
2872018
The origin and evolution of maize in the Southwestern United States
RR Da Fonseca, BD Smith, N Wales, E Cappellini, P Skoglund, ...
Nature plants 1 (1), 1-5, 2015
1802015
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat
ML Zepeda Mendoza, Z Xiong, M Escalera-Zamudio, AK Runge, J Thézé, ...
Nature ecology & evolution 2 (4), 659-668, 2018
1522018
Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean
H Schroeder, MC Ávila-Arcos, AS Malaspinas, GD Poznik, ...
Proceedings of the National Academy of Sciences 112 (12), 3669-3673, 2015
1402015
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
MD Martin, E Cappellini, JA Samaniego, ML Zepeda, PF Campos, ...
Nature communications 4 (1), 2172, 2013
1312013
Interspecific gene flow shaped the evolution of the genus Canis
S Gopalakrishnan, MHS Sinding, J Ramos-Madrigal, J Niemann, ...
Current Biology 28 (21), 3441-3449. e5, 2018
1262018
Palaeogenomic insights into the origins of French grapevine diversity
J Ramos-Madrigal, AKW Runge, L Bouby, T Lacombe, ...
Nature plants 5 (6), 595-603, 2019
1012019
Molecular epidemiology of the SARS-CoV-2 variant Omicron BA. 2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022
J Fonager, M Bennedbæk, P Bager, J Wohlfahrt, KM Ellegaard, ...
Eurosurveillance 27 (10), 2200181, 2022
892022
The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
S Gopalakrishnan, JA Samaniego Castruita, MHS Sinding, LFK Kuderna, ...
BMC genomics 18, 1-11, 2017
832017
Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia
L Loog, O Thalmann, MHS Sinding, VJ Schuenemann, A Perri, ...
Molecular ecology 29 (9), 1596-1610, 2020
792020
Arctic-adapted dogs emerged at the Pleistocene–Holocene transition
MHS Sinding, S Gopalakrishnan, J Ramos-Madrigal, M de Manuel, ...
Science 368 (6498), 1495-1499, 2020
772020
Dire wolves were the last of an ancient New World canid lineage
AR Perri, KJ Mitchell, A Mouton, S Álvarez-Carretero, A Hulme-Beaman, ...
Nature 591 (7848), 87-91, 2021
642021
Population genomics of grey wolves and wolf-like canids in North America
MHS Sinding, S Gopalakrishan, FG Vieira, JA Samaniego Castruita, ...
PLoS Genetics 14 (11), e1007745, 2018
602018
The limits and potential of paleogenomic techniques for reconstructing grapevine domestication
N Wales, JR Madrigal, E Cappellini, AC Baez, JAS Castruita, ...
Journal of archaeological science 72, 57-70, 2016
532016
Influence of past climate change on phylogeography and demographic history of narwhals, Monodon monoceros
M Louis, M Skovrind, JA Samaniego Castruita, C Garilao, K Kaschner, ...
Proceedings of the Royal Society B 287 (1925), 20192964, 2020
492020
New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA
N Wales, C Carøe, M Sandoval-Velasco, C Gamba, R Barnett, ...
Biotechniques 59 (6), 368-371, 2015
492015
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