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Lin An
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Year
Integrative detection and analysis of structural variation in cancer genomes.
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics, 2018
3152018
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
Y Zhang*, L An*, J Xu, B Zhang, WJ Zheng, M Hu, J Tang, F Yue
Nature communications 9 (1), 750, 2018
1762018
Molecular evolution and functional divergence of tubulin superfamily in the fungal tree of life
Z Zhao, H Liu, Y Luo, S Zhou, L An, C Wang, Q Jin, M Zhou, JR Xu
Scientific Reports 4 (1), 6746, 2014
1012014
Jointly characterizing epigenetic dynamics across multiple human cell types
Y Zhang, L An, F Yue, RC Hardison
Nucleic acids research 44 (14), 6721-6731, 2016
882016
OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries
L An, T Yang, J Yang, J Nuebler, G Xiang, RC Hardison, Q Li, Y Zhang
Genome Biology 20 (1), 1-16, 2019
622019
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
G Xiang, CA Keller, E Heuston, BM Giardine, L An, AQ Wixom, A Miller, ...
Genome research 30 (3), 472-484, 2020
362020
Discovery of metabolic biomarkers for Duchenne muscular dystrophy within a natural history study
SM Boca, M Nishida, M Harris, S Rao, AK Cheema, K Gill, H Seol, ...
PloS one 11 (4), 2016
312016
S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data
G Xiang, CA Keller, B Giardine, L An, Q Li, Y Zhang, RC Hardison
Nucleic Acids Research 48 (8), e43-e43, 2020
302020
Expression Profiling of Several Gene Families Involved in Anthocyanin Biosynthesis in Apple (Malus domestica Borkh.) Skin During Fruit Development
R Meng, J Zhang, L An, B Zhang, X Jiang, Y Yang, Z Zhao
Journal of Plant Growth Regulation 35, 449-464, 2016
292016
SNP2Structure: a public and versatile resource for mapping and three-dimensional modeling of missense SNPs on human protein structures
D Wang, L Song, V Singh, S Rao, L An, S Madhavan
Computational and structural biotechnology journal 13, 514-519, 2015
232015
Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells
RC Hardison, Y Zhang, CA Keller, G Xiang, EF Heuston, L An, ...
IUBMB life 72 (1), 27-38, 2020
72020
Snapshot: clustering and visualizing epigenetic history during cell differentiation
G Xiang, B Giardine, L An, C Sun, C Keller, E Heuston, D Bodine, ...
bioRxiv, 291880, 2018
42018
Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation
G Xiang, B Giardine, L An, C Sun, CA Keller, EF Heuston, SM Anderson, ...
BMC bioinformatics 24 (1), 102, 2023
22023
Methods to Assess the Reproducibility and Similarity of Hi-C Data
T Yang, X He, L An, Q Li
Hi-C Data Analysis: Methods and Protocols, 17-37, 2022
12022
Biomarkers profiling in patients with mucopolysaccharidosis and Correlation with other Primary Biomarkers
L An, H Wang, L Guo, T He, A Joshi, G Roberto, H Zhao, ...
19th Annual WORLDSymposium, 2023
2023
Leveraging Proteomic Profiles Identifies Dupilumab Treatment-Associated Biomarkers for Atopic Dermatitis
L An, K Hulse, M Mack, S Weidinger, P Bryce, B Zhang
HUPO, 2022
2022
Development of proteomic-biomarker landscape of AY9944-treated mouse brain tissues mimicking Smith-Lemli-Opitz syndrome (SLOS) by using DIA-PASEF and DIA-FAIMS mass spectrometry
M Hossain, MS Ritorto, L An, T Treleaven, G Sheng, E Gordon, DM Assis, ...
ASMS Conference on Mass Spectrometry and Allied Topics, 2022
2022
Understanding Gene Regulation at a Fine-Scale: Zooming into 3D Chromatin Conformation
L An
The Pennsylvania State University, 2019
2019
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Articles 1–18