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Douglas R. Hoen
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Year
The map-based sequence of the rice genome
P Khurana, K Gaikwad
Nature 436, 793-800, 2005
2527*2005
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
KL McNally, KL Childs, R Bohnert, RM Davidson, K Zhao, VJ Ulat, ...
Proceedings of the National Academy of Sciences 106 (30), 12273-12278, 2009
6982009
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ...
Nature genetics 45 (8), 891-898, 2013
3822013
The rice annotation project database (RAP-DB): 2008 update
Rice Annotation Project
Nucleic Acids Research 36 (suppl_1), D1028-D1033, 2007
3312007
Immunogenic neoantigens derived from gene fusions stimulate T cell responses
W Yang, KW Lee, RM Srivastava, F Kuo, C Krishna, D Chowell, ...
Nature medicine 25 (5), 767-775, 2019
3062019
Pretreatment neutrophil-to-lymphocyte ratio and mutational burden as biomarkers of tumor response to immune checkpoint inhibitors
C Valero, M Lee, D Hoen, K Weiss, DW Kelly, PS Adusumilli, PK Paik, ...
Nature communications 12 (1), 729, 2021
2402021
The evolutionary fate of MULE-mediated duplications of host gene fragments in rice
N Juretic, DR Hoen, ML Huynh, PM Harrison, TE Bureau
Genome research 15 (9), 1292-1297, 2005
2352005
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
T Itoh, T Tanaka, RA Barrero, C Yamasaki, Y Fujii, PB Hilton, BA Antonio, ...
Genome research 17 (2), 175-183, 2007
2292007
The association between tumor mutational burden and prognosis is dependent on treatment context
C Valero, M Lee, D Hoen, J Wang, Z Nadeem, N Patel, MA Postow, ...
Nature genetics 53 (1), 11-15, 2021
1582021
Response rates to anti–PD-1 immunotherapy in microsatellite-stable solid tumors with 10 or more mutations per megabase
C Valero, M Lee, D Hoen, A Zehir, MF Berger, VE Seshan, TA Chan, ...
JAMA oncology 7 (5), 739-743, 2021
1452021
Improved prediction of immune checkpoint blockade efficacy across multiple cancer types
D Chowell, SK Yoo, C Valero, A Pastore, C Krishna, M Lee, D Hoen, ...
Nature biotechnology 40 (4), 499-506, 2022
1442022
Mutations in BRCA1 and BRCA2 differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy
RM Samstein, C Krishna, X Ma, X Pei, KW Lee, V Makarov, F Kuo, ...
Nature cancer 1 (12), 1188-1203, 2020
1372020
Transposon-Mediated Expansion and Diversification of a Family of ULP-like Genes
DR Hoen, KC Park, N Elrouby, Z Yu, N Mohabir, RK Cowan, TE Bureau
Molecular biology and evolution 23 (6), 1254-1268, 2006
1032006
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 1-9, 2015
942015
MUSTANG Is a Novel Family of Domesticated Transposase Genes Found in Diverse Angiosperms
RK Cowan, DR Hoen, DJ Schoen, TE Bureau
Molecular biology and evolution 22 (10), 2084-2089, 2005
842005
Discovery of novel genes derived from transposable elements using integrative genomic analysis
DR Hoen, TE Bureau
Molecular biology and evolution 32 (6), 1487-1506, 2015
692015
A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thaliana
Z Joly-Lopez, E Forczek, DR Hoen, N Juretic, TE Bureau
Public Library of Science 8 (9), e1002931, 2012
642012
Cytotoxic lymphocytes target characteristic biophysical vulnerabilities in cancer
M Tello-Lafoz, K Srpan, EE Sanchez, J Hu, J Remsik, Y Romin, A Calò, ...
Immunity 54 (5), 1037-1054. e7, 2021
632021
A pan-cancer analysis of PBAF complex mutations and their association with immunotherapy response
AA Hakimi, K Attalla, RG DiNatale, I Ostrovnaya, J Flynn, KA Blum, Y Ged, ...
Nature communications 11 (1), 4168, 2020
532020
Functional landscapes of POLE and POLD1 mutations in checkpoint blockade-dependent antitumor immunity
X Ma, N Riaz, RM Samstein, M Lee, V Makarov, C Valero, D Chowell, ...
Nature genetics 54 (7), 996-1012, 2022
362022
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