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Yiwen Chen
Yiwen Chen
Associate Professor at University of Texas MD Anderson Cancer Center
Verified email at mdanderson.org
Title
Cited by
Cited by
Year
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
19712012
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
9922020
XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway
X Chen, D Iliopoulos, Q Zhang, Q Tang, MB Greenblatt, M Hatziapostolou, ...
Nature 508 (7494), 103-107, 2014
7312014
Cistrome: an integrative platform for transcriptional regulation studies
T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ...
Genome biology 12 (8), 1-10, 2011
6642011
REST and stress resistance in ageing and Alzheimer’s disease
T Lu, L Aron, J Zullo, Y Pan, H Kim, Y Chen, TH Yang, HM Kim, D Drake, ...
Nature 507 (7493), 448-454, 2014
6492014
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
Z Du, T Fei, RGW Verhaak, Z Su, Y Zhang, M Brown, Y Chen, XS Liu
Nature structural & molecular biology 20 (7), 908-913, 2013
5402013
Targeting androgen receptor in estrogen receptor-negative breast cancer
M Ni, Y Chen, E Lim, H Wimberly, ST Bailey, Y Imai, DL Rimm, XS Liu, ...
Cancer cell 20 (1), 119-131, 2011
3902011
Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation
CL Hsieh, T Fei, Y Chen, T Li, Y Gao, X Wang, T Sun, CJ Sweeney, ...
Proceedings of the National Academy of Sciences 111 (20), 7319-7324, 2014
3402014
Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer
Z Du, T Sun, E Hacisuleyman, T Fei, X Wang, M Brown, JL Rinn, MGS Lee, ...
Nature communications 7 (1), 1-10, 2016
2672016
Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing
T Fei, Y Chen, T Xiao, W Li, L Cato, P Zhang, MB Cotter, M Bowden, ...
Proceedings of the National Academy of Sciences 114 (26), E5207-E5215, 2017
2342017
Systematic evaluation of factors influencing ChIP-seq fidelity
Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ...
Nature methods 9 (6), 609-614, 2012
1982012
Protein folding: then and now
Y Chen, F Ding, H Nie, AW Serohijos, S Sharma, KC Wilcox, S Yin, ...
Archives of biochemistry and biophysics 469 (1), 4-19, 2008
1432008
The emerging function and mechanism of ceRNAs in cancer
Y Wang, J Hou, D He, M Sun, P Zhang, Y Yu, Y Chen
Trends in Genetics 32 (4), 211-224, 2016
1412016
A Comprehensive View of Nuclear Receptor Cancer CistromesA Comprehensive View of Nuclear Receptor Cancer Cistromes
Q Tang, Y Chen, C Meyer, T Geistlinger, M Lupien, Q Wang, T Liu, ...
Cancer research 71 (22), 6940-6947, 2011
1392011
Capturing the interactome of newly transcribed RNA
X Bao, X Guo, M Yin, M Tariq, Y Lai, S Kanwal, J Zhou, N Li, Y Lv, ...
Nature methods 15 (3), 213-220, 2018
1322018
Pharmacological targeting of MYC-regulated IRE1/XBP1 pathway suppresses MYC-driven breast cancer
NA Zhao, J Cao, L Xu, Q Tang, LE Dobrolecki, X Lv, M Talukdar, Y Lu, ...
The Journal of clinical investigation 128 (4), 1283-1299, 2018
1272018
Amplitude modulation of androgen signaling by c-MYC
M Ni, Y Chen, T Fei, D Li, E Lim, XS Liu, M Brown
Genes & development 27 (7), 734-748, 2013
922013
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
Q Qin, S Mei, Q Wu, H Sun, L Li, L Taing, S Chen, F Li, T Liu, C Zang, ...
BMC bioinformatics 17 (1), 1-13, 2016
902016
Deciphering protein dynamics from NMR data using explicit structure sampling and selection
Y Chen, SL Campbell, NV Dokholyan
Biophysical journal 93 (7), 2300-2306, 2007
872007
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate
RDS Dixon, Y Chen, F Ding, SD Khare, KC Prutzman, MD Schaller, ...
Structure 12 (12), 2161-2171, 2004
782004
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Articles 1–20