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Bonnie Berger
Bonnie Berger
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
24622020
Efficient Bayesian mixed-model analysis increases association power in large cohorts
PR Loh, G Tucker, BK Bulik-Sullivan, BJ Vilhjįlmsson, HK Finucane, ...
Nature genetics 47 (3), 284-290, 2015
16392015
Ancient human genomes suggest three ancestral populations for present-day Europeans
I Lazaridis, N Patterson, A Mittnik, G Renaud, S Mallick, K Kirsanow, ...
Nature 513 (7518), 409-413, 2014
16032014
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
11052010
Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
1104*2008
Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs
T Bepler, A Morin, M Rapp, J Brasch, L Shapiro, AJ Noble, B Berger
Nature methods 16 (11), 1153-1160, 2019
10092019
MultiCoil: a program for predicting two‐and three‐stranded coiled coils
E Wolf, PS Kim, B Berger
Protein Science 6 (6), 1179-1189, 1997
9241997
Predicting coiled coils by use of pairwise residue correlations.
B Berger, DB Wilson, E Wolf, T Tonchev, M Milla, PS Kim
Proceedings of the National Academy of Sciences 92 (18), 8259-8263, 1995
8341995
ARACHNE: a whole-genome shotgun assembler
S Batzoglou, DB Jaffe, K Stanley, J Butler, S Gnerre, E Mauceli, B Berger, ...
Genome research 12 (1), 177-189, 2002
7952002
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
B Hie, B Bryson, B Berger
Nature biotechnology 37 (6), 685-691, 2019
7602019
An integrative approach to ortholog prediction for disease-focused and other functional studies
Y Hu, I Flockhart, A Vinayagam, C Bergwitz, B Berger, N Perrimon, ...
BMC bioinformatics 12, 1-16, 2011
7492011
Protein folding in the hydrophobic-hydrophilic (HP) is NP-complete
B Berger, T Leighton
Proceedings of the second annual international conference on Computational …, 1998
7341998
Widespread macromolecular interaction perturbations in human genetic disorders
N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ...
Cell 161 (3), 647-660, 2015
5952015
Human and mouse gene structure: comparative analysis and application to exon prediction
S Batzoglou, L Pachter, J Mesirov, B Berger, ES Lander
Proceedings of the fourth annual international conference on Computational …, 2000
5932000
Paircoil2: improved prediction of coiled coils from sequence
AV McDonnell, T Jiang, AE Keating, B Berger
Bioinformatics 22 (3), 356-358, 2006
5202006
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks
ED Zhong, T Bepler, B Berger, JH Davis
Nature methods 18 (2), 176-185, 2021
5092021
Inferring admixture histories of human populations using linkage disequilibrium
PR Loh, M Lipson, N Patterson, P Moorjani, JK Pickrell, D Reich, B Berger
Genetics 193 (4), 1233-1254, 2013
5032013
Allergic inflammatory memory in human respiratory epithelial progenitor cells
J Ordovas-Montanes, DF Dwyer, SK Nyquist, KM Buchheit, M Vukovic, ...
Nature 560 (7720), 649-654, 2018
5002018
IsoRankN: spectral methods for global alignment of multiple protein networks
CS Liao, K Lu, M Baym, R Singh, B Berger
Bioinformatics 25 (12), i253-i258, 2009
5002009
Herpesviral protein networks and their interaction with the human proteome
P Uetz, YA Dong, C Zeretzke, C Atzler, A Baiker, B Berger, SV Rajagopala, ...
Science 311 (5758), 239-242, 2006
4982006
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Articles 1–20