João Gonçalo Rocha Cardoso
João Gonçalo Rocha Cardoso
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Cameo: a Python library for computer aided metabolic engineering and optimization of cell factories
JGR Cardoso, K Jensen, C Lieven, AS Lærke Hansen, S Galkina, ...
ACS synthetic biology 7 (4), 1163-1166, 2018
Analysis of genetic variation and potential applications in genome-scale metabolic modeling
JGR Cardoso, MR Andersen, MJ Herrgård, N Sonnenschein
Frontiers in bioengineering and biotechnology 3, 13, 2015
Optlang: An algebraic modeling language for mathematical optimization
K Jensen, J Cardoso, N Sonnenschein
The Journal of Open Source Software, 2016
Genome-wide semi-automated annotation of transporter systems
O Dias, D Gomes, P Vilaça, J Cardoso, M Rocha, EC Ferreira, I Rocha
IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2016
Analysis of Pseudomonas putida growth on non‐trivial carbon sources using transcriptomics and genome‐scale modelling
I D'Arrigo, JGR Cardoso, M Rennig, N Sonnenschein, MJ Herrgård, ...
Environmental microbiology reports 11 (2), 87-97, 2019
MARSI: metabolite analogues for rational strain improvement
JGR Cardoso, AA Zeidan, K Jensen, N Sonnenschein, AR Neves, ...
Bioinformatics 34 (13), 2319-2321, 2018
Cameo: a Python library for computer aided metabolic engineering and optimization of cell factories. ACS Synth. Biol. 7, 1163–1166
JGR Cardoso, K Jensen, C Lieven, ASL Hansen, S Galkina, M Beber, ...
FurIOS: a web-based tool for identification of Vibrionaceae species using the fur gene
H Machado, J Cardoso, S Giubergia, K Rapacki, L Gram
Frontiers in microbiology 8, 414, 2017
An algorithm to assemble gene-protein-reaction associations for genome-scale metabolic model reconstruction
J Cardoso, P Vilaça, S Soares, M Rocha
IAPR International Conference on Pattern Recognition in Bioinformatics, 118-128, 2012
Development and application of computer-aided design methods for cell factory optimization
JGR Cardoso, N Sonnenschein, PI Nikel, KR Patil, ME Penttilä, ...
Technical University of Denmark, 2017
Analysis of gene essentiality in Escherichia coli across strains and growth conditions
I Bonde, R Lennen, J Cardoso, A Koza, M Herrgard
First Annual Danish Bioinformatics Conference, 2015
A compendium of genetic variant data
J Cardoso, LY Schöning, M Herrgard, N Sonnenschein
DTU Sustain Conference 2014, 2014
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