| CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse Q Wang, J Huang, H Sun, J Liu, J Wang, Q Wang, Q Qin, S Mei, C Zhao, ... Nucleic acids research 42 (D1), D450-D458, 2014 | 48 | 2014 |
| Unique molecular events during reprogramming of human somatic cells to induced pluripotent stem cells (iPSCs) at naïve state Y Wang, C Zhao, Z Hou, Y Yang, Y Bi, H Wang, Y Zhang, S Gao Elife 7, e29518, 2018 | 44 | 2018 |
| Single‐cell transcriptomics of LepR‐positive skeletal cells reveals heterogeneous stress‐dependent stem and progenitor pools C Mo, J Guo, J Qin, X Zhang, Y Sun, H Wei, D Cao, Y Zhang, C Zhao, ... The EMBO Journal 41 (4), e108415, 2022 | 40 | 2022 |
| Dr. seq2: a quality control and analysis pipeline for parallel single cell transcriptome and epigenome data C Zhao, S Hu, X Huo, Y Zhang PLoS One 12 (7), e0180583, 2017 | 31 | 2017 |
| Identification of ALPPL2 as a naive pluripotent state-specific surface protein essential for human naive pluripotency regulation Y Bi, Z Tu, Y Zhang, P Yang, M Guo, X Zhu, C Zhao, J Zhou, H Wang, ... Cell Reports 30 (11), 3917-3931. e5, 2020 | 27 | 2020 |
| UdgX-mediated uracil sequencing at single-nucleotide resolution L Jiang, J Yin, M Qian, S Rong, S Zhang, K Chen, C Zhao, Y Tan, J Guo, ... Journal of the American Chemical Society 144 (3), 1323-1331, 2022 | 9 | 2022 |
| CAM: A quality control pipeline for MNase-seq data S Hu, X Chen, J Liao, Y Chen, C Zhao, Y Zhang PloS one 12 (8), e0182771, 2017 | 9 | 2017 |
| CStreet: a computed Cell State trajectory inference method for time-series single-cell RNA sequencing data C Zhao, W Xiu, Y Hua, N Zhang, Y Zhang Bioinformatics 37 (21), 3774-3780, 2021 | 7 | 2021 |
| Dr. seq: a quality control and analysis pipeline for droplet sequencing X Huo, S Hu, C Zhao, Y Zhang Bioinformatics 32 (14), 2221-2223, 2016 | 6 | 2016 |
| A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos C Zhao, N Zhang, Y Zhang, N Tuersunjiang, S Gao, W Liu, Y Zhang Genome Biology 21, 1-23, 2020 | 4 | 2020 |
| The NuRD complex cooperates with SALL4 to orchestrate reprogramming B Wang, C Li, J Ming, L Wu, S Fang, Y Huang, L Lin, H Liu, J Kuang, ... Nature Communications 14 (1), 2846, 2023 | 2 | 2023 |
| GLEANER: a web server for GermLine cycle Expression ANalysis and Epigenetic Roadmap visualization S Zeng, Y Hua, Y Zhang, G Liu, C Zhao BMC bioinformatics 22, 1-13, 2021 | 1 | 2021 |
| Cell fate decision by a morphogen-transcription factor-chromatin modifier axis D Pei, L Lin, S Fang, Y Fu, Y Qin, X Zhang, J Liu, J Chen, C Zhao, B Wang | | 2023 |
| Mechanical strain treatment improves nuclear transfer reprogramming efficiency by enhancing chromatin accessibility Y Chen, R Xu, S Zhou, C Zhao, Z Hu, Y Hua, Y Xiong, X Liu, J Lü, Y Sun, ... Stem Cell Reports 18 (4), 807-816, 2023 | | 2023 |
