David Lyon
David Lyon
University of Zurich and Swiss Institute of Bioinformatics
Verified email at - Homepage
Cited by
Cited by
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic acids research 49 (D1), D605-D612, 2021
Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation
IA Hendriks, D Lyon, C Young, LJ Jensen, ACO Vertegaal, ML Nielsen
Nature structural & molecular biology 24 (3), 325-336, 2017
Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells
SC Larsen, KB Sylvestersen, A Mund, D Lyon, M Mullari, MV Madsen, ...
Science signaling 9 (443), rs9-rs9, 2016
Site-specific characterization of endogenous SUMOylation across species and organs
IA Hendriks, D Lyon, D Su, NH Skotte, JA Daniel, LJ Jensen, ML Nielsen
Nature communications 9 (1), 2456, 2018
Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation
BK Hansen, R Gupta, L Baldus, D Lyon, T Narita, M Lammers, ...
Nature communications 10 (1), 1055, 2019
Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny
E Cappellini, F Welker, L Pandolfi, J Ramos-Madrigal, D Samodova, ...
Nature 574 (7776), 103-107, 2019
Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism
H Doerfler, D Lyon, T Nägele, X Sun, L Fragner, F Hadacek, V Egelhofer, ...
Metabolomics 9, 564-574, 2013
Systems-wide analysis of serine ADP-ribosylation reveals widespread occurrence and site-specific overlap with phosphorylation
SC Larsen, IA Hendriks, D Lyon, LJ Jensen, ML Nielsen
Cell reports 24 (9), 2493-2505. e4, 2018
Accurate quantification of site-specific acetylation stoichiometry reveals the impact of sirtuin deacetylase CobB on the E. coli acetylome
BT Weinert, S Satpathy, BK Hansen, D Lyon, LJ Jensen, C Choudhary
Molecular & Cellular Proteomics 16 (5), 759-769, 2017
Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform
A Mari, D Lyon, L Fragner, P Montoro, S Piacente, S Wienkoop, ...
Metabolomics 9, 599-607, 2013
Palaeoproteomic profiling of conservation layers on a 14th century Italian wall painting
M Mackie, P Rüther, D Samodova, F Di Gianvincenzo, C Granzotto, ...
Angewandte Chemie International Edition 57 (25), 7369-7374, 2018
Quantitative metaproteomics of medieval dental calculus reveals individual oral health status
RR Jersie-Christensen, LT Lanigan, D Lyon, M Mackie, D Belstrøm, ...
Nature communications 9 (1), 4744, 2018
Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth
T Ischebeck, L Valledor, D Lyon, S Gingl, M Nagler, M Meijon, V Egelhofer, ...
Molecular & Cellular Proteomics 13 (1), 295-310, 2014
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls
D Belstrøm, RR Jersie-Christensen, D Lyon, C Damgaard, LJ Jensen, ...
PeerJ 4, e2433, 2016
Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br.(Pearl millet)
A Ghatak, P Chaturvedi, M Nagler, V Roustan, D Lyon, G Bachmann, ...
Journal of Proteomics 143, 122-135, 2016
Avoiding abundance bias in the functional annotation of posttranslationally modified proteins
C Schölz, D Lyon, JC Refsgaard, LJ Jensen, C Choudhary, BT Weinert
Nature methods 12 (11), 1003-1004, 2015
Drought and recovery: independently regulated processes highlighting the importance of protein turnover dynamics and translational regulation in Medicago truncatula
D Lyon, MA Castillejo, V Mehmeti-Tershani, C Staudinger, C Kleemaier, ...
Molecular & Cellular Proteomics 15 (6), 1921-1937, 2016
mzGroupAnalyzer-predicting pathways and novel chemical structures from untargeted high-throughput metabolomics data
H Doerfler, X Sun, L Wang, D Engelmeier, D Lyon, W Weckwerth
PloS one 9 (5), e96188, 2014
Specifying RNA-binding regions in proteins by peptide cross-linking and affinity purification
M Mullari, D Lyon, LJ Jensen, ML Nielsen
Journal of proteome research 16 (8), 2762-2772, 2017
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