Martin Krallinger

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Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Lynette HirschmanThe MITRE CorporationVerified email at mitre.org
Obdulia RabalCIMA - University of NavarraVerified email at unav.es
Antonio Miranda-EscaladaSenior Data Scientist, LHF LabsVerified email at lhf.ai
Marta VillegasBarcelona Supercomputing CenterVerified email at bsc.es
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Ander IntxaurrondoResearcher at the Barcelona Supercomputing CenterVerified email at bsc.es
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Aitor Gonzalez-AgirreBarcelona Supercomputing Center (BSC)Verified email at bsc.es
Cathy WuUniversity of DelawareVerified email at udel.edu
Cecilia ArighiUniversity of DelawareVerified email at udel.edu
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Salvador Lima LópezResearch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Anastasios NentidisNCSR "Demokritos", Greece & Aristotle University of Thessaloniki, GreeceVerified email at iit.demokritos.gr
Martín Perez PerezCINBIO, Universidade de Vigo, Department of Computer Science, ESEI – Escuela Superior de IngenieríaVerified email at esei.uvigo.es
Georgios PaliourasNational Center for Scientific Research "Demokritos", Athens, GreeceVerified email at iit.demokritos.gr
Anastasia KritharaPost-doctoral Researcher in National Center for Scientific Research "Demokritos", Athens, GreeceVerified email at iit.demokritos.gr
Jose A Lopez-MartinGÉTICA | PharmaMarVerified email at systemsmed.net

Martin Krallinger

*Head of Natural Language Processing for Biomedical Information Analysis (NLP4BIA), Barcelona

Verified email at bsc.es - Homepage

Biomedicine NLP text mining language models AI


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Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9, 1-19, 2008	334	2008
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	272	2015
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9 (2), 1-14, 2008	270	2008
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6 (7), 1-8, 2005	260	2005
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017	242	2017
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9 (2), 1-9, 2008	229	2008
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7 (1), 1-11, 2015	226	2015
Overview of the BioCreative VI chemical-protein interaction Track M Krallinger, O Rabal, SA Akhondi, M Pérez Pérez, J Santamaría, ... Proceedings of the sixth BioCreative challenge evaluation workshop 1, 141-146, 2017	212	2017
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005	210	2005
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013	192	2013
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6, 1-13, 2005	183	2005
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011	182	2011
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012	181	2012
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010	139	2010
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9, 1-15, 2008	130	2008
Overview of the CLEF eHealth evaluation lab 2020 L Goeuriot, H Suominen, L Kelly, A Miranda-Escalada, M Krallinger, Z Liu, ... Experimental IR Meets Multilinguality, Multimodality, and Interaction: 11th …, 2020	129	2020
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12, 1-9, 2011	125	2011
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005	118	2005
Analysis of biological processes and diseases using text mining approaches M Krallinger, F Leitner, A Valencia Bioinformatics Methods in Clinical Research, 341-382, 2010	105	2010
Text mining for drugs and chemical compounds: methods, tools and applications M Vazquez, M Krallinger, F Leitner, A Valencia Molecular Informatics 30 (6‐7), 506-519, 2011	99	2011

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