Anton Feenstra
Anton Feenstra
Assistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU University
Verified email at - Homepage
Cited by
Cited by
Improving efficiency of large timescale molecular dynamics simulations of hydrogen-rich systems
KA Feenstra, B Hess, HJC Berendsen
J Comput Chem 20, 786-798, 1999
Gromacs User Manual version 4.0, 2005
D Van Der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ...
URL http://www. gromacs. org/Documentation/Manual, 2009
GROMACS user manual version 5.1
MJ Abraham, D Van Der Spoel, E Lindahl, B Hess
Cytochrome P450 in silico: an integrative modeling approach
C De Graaf, NPE Vermeulen, KA Feenstra
Journal of medicinal chemistry 48 (8), 2725-2755, 2005
Gromacs user manual version 3.1. 1
D Van der Spoel, AR Van Buuren, E Apol, PJ Meulenhoff, DP Tieleman, ...
Nijenborgh 4, 9747, 2002
Dynamic conformations of flavin adenine dinucleotide: simulated molecular dynamics of the flavin cofactor related to the time-resolved fluorescence characteristics
PAW Van den Berg, KA Feenstra, AE Mark, HJC Berendsen, AJWG Visser
The Journal of Physical Chemistry B 106 (34), 8858-8869, 2002
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
Interaction of 14-3-3 proteins with the estrogen receptor alpha F domain provides a drug target interface
IJ De Vries-van Leeuwen, D da Costa Pereira, KD Flach, SR Piersma, ...
Proceedings of the National Academy of Sciences 110 (22), 8894-8899, 2013
Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting
K Ye, K Anton Feenstra, J Heringa, AP IJzerman, E Marchiori
Bioinformatics 24 (1), 18-25, 2008
Sequence comparison by sequence harmony identifies subtype-specific functional sites
W Pirovano, KA Feenstra, J Heringa
Nucleic acids research 34 (22), 6540-6548, 2006
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model
N Bonzanni, A Garg, KA Feenstra, J Schütte, S Kinston, ...
Bioinformatics 29 (13), i80-i88, 2013
Metabolic Regio- and Stereoselectivity of Cytochrome P450 2D6 towards 3,4-Methylenedioxy-N-alkylamphetamines:  in Silico Predictions and Experimental …
PHJ Keizers, C de Graaf, FJJ de Kanter, C Oostenbrink, KA Feenstra, ...
Journal of medicinal chemistry 48 (19), 6117-6127, 2005
Altering the regioselectivity of cytochrome P450 CYP102A3 of Bacillus subtilis by using a new versatile assay system
O Lentz, A Feenstra, T Habicher, B Hauer, RD Schmid, VB Urlacher
ChemBioChem 7 (2), 345-350, 2006
Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development
N Bonzanni, E Krepska, KA Feenstra, W Fokkink, T Kielmann, H Bal, ...
Bioinformatics 25 (16), 2049-2056, 2009
Multi-Harmony: detecting functional specificity from sequence alignment
BW Brandt, KA Feenstra, J Heringa
Nucleic acids research 38 (suppl_2), W35-W40, 2010
A comparison of methods for calculating NMR cross-relaxation rates (NOESY and ROESY intensities) in small peptides
KA Feenstra, C Peter, RM Scheek, WF van Gunsteren, AE Mark
Journal of biomolecular NMR 23 (3), 181-194, 2002
Sequence harmony: detecting functional specificity from alignments
KA Feenstra, W Pirovano, K Krab, J Heringa
Nucleic acids research 35 (suppl_2), W495-W498, 2007
Combining substrate dynamics, binding statistics, and energy barriers to rationalize regioselective hydroxylation of octane and lauric acid by CYP102A1 and mutants
KA Feenstra, EB Starikov, VB Urlacher, JNM Commandeur, ...
Protein science 16 (3), 420-431, 2007
HIV-1 envelope glycoprotein signatures that correlate with the development of cross-reactive neutralizing activity
TLGM Van den Kerkhof, KA Feenstra, Z Euler, MJ Van Gils, LWE Rijsdijk, ...
Retrovirology 10 (1), 1-19, 2013
Gromacs User Manual Version 3.0: Nijenborgh 4, 9747 AG, Groningen, The Netherlands
D van der Spoel, AR van Buuren, E Apol, PJ Meulenhoff, DP Tieleman, ...
Internet: http://www. gromacs. org, 2001
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