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Anton Feenstra
Anton Feenstra
Assistant professor of Bioinformatics, IBIVU Centre for Integrative Bioinformatics, VU University
Verified email at vu.nl - Homepage
Title
Cited by
Cited by
Year
Improving efficiency of large timescale molecular dynamics simulations of hydrogen-rich systems
KA Feenstra, B Hess, HJC Berendsen
J Comput Chem 20, 786-798, 1999
8791999
Gromacs User Manual version 4.0, 2005
D Van Der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ...
URL http://www. gromacs. org/Documentation/Manual, 2009
741*2009
GROMACS user manual version 5.1
MJ Abraham, D Van Der Spoel, E Lindahl, B Hess
575*2014
Cytochrome P450 in silico: an integrative modeling approach
C De Graaf, NPE Vermeulen, KA Feenstra
Journal of medicinal chemistry 48 (8), 2725-2755, 2005
2692005
Dynamic conformations of flavin adenine dinucleotide: simulated molecular dynamics of the flavin cofactor related to the time-resolved fluorescence characteristics
PAW Van den Berg, KA Feenstra, AE Mark, HJC Berendsen, AJWG Visser
The Journal of Physical Chemistry B 106 (34), 8858-8869, 2002
1612002
Gromacs user manual version 3.1. 1
D Van der Spoel, AR Van Buuren, E Apol, PJ Meulenhoff, DP Tieleman, ...
Nijenborgh 4, 9747, 2002
1432002
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
1302008
Interaction of 14-3-3 proteins with the estrogen receptor alpha F domain provides a drug target interface
IJ De Vries-van Leeuwen, D da Costa Pereira, KD Flach, SR Piersma, ...
Proceedings of the National Academy of Sciences 110 (22), 8894-8899, 2013
1112013
Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting
K Ye, K Anton Feenstra, J Heringa, AP IJzerman, E Marchiori
Bioinformatics 24 (1), 18-25, 2008
902008
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model
N Bonzanni, A Garg, KA Feenstra, J Schütte, S Kinston, ...
Bioinformatics 29 (13), i80-i88, 2013
892013
Sequence comparison by sequence harmony identifies subtype-specific functional sites
W Pirovano, KA Feenstra, J Heringa
Nucleic acids research 34 (22), 6540-6548, 2006
882006
Metabolic Regio- and Stereoselectivity of Cytochrome P450 2D6 towards 3,4-Methylenedioxy-N-alkylamphetamines:  in Silico Predictions and Experimental …
PHJ Keizers, C de Graaf, FJJ de Kanter, C Oostenbrink, KA Feenstra, ...
Journal of medicinal chemistry 48 (19), 6117-6127, 2005
762005
Altering the regioselectivity of cytochrome P450 CYP102A3 of Bacillus subtilis by using a new versatile assay system
O Lentz, A Feenstra, T Habicher, B Hauer, RD Schmid, VB Urlacher
ChemBioChem 7 (2), 345-350, 2006
752006
Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development
N Bonzanni, E Krepska, KA Feenstra, W Fokkink, T Kielmann, H Bal, ...
Bioinformatics 25 (16), 2049-2056, 2009
632009
Multi-Harmony: detecting functional specificity from sequence alignment
BW Brandt, KA Feenstra, J Heringa
Nucleic acids research 38 (suppl_2), W35-W40, 2010
622010
Gromacs User Manual Version 3.0: Nijenborgh 4, 9747 AG, Groningen, The Netherlands
D van der Spoel, AR van Buuren, E Apol, PJ Meulenhoff, DP Tieleman, ...
Internet: http://www. gromacs. org, 2001
562001
Seeing the trees through the forest: sequence-based homo-and heteromeric protein-protein interaction sites prediction using random forest
Q Hou, PFG De Geest, WF Vranken, J Heringa, KA Feenstra
Bioinformatics 33 (10), 1479-1487, 2017
512017
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins
A May, R Pool, E van Dijk, J Bijlard, S Abeln, J Heringa, KA Feenstra
Bioinformatics 30 (3), 326-334, 2014
472014
HIV-1 envelope glycoprotein signatures that correlate with the development of cross-reactive neutralizing activity
TLGM Van den Kerkhof, KA Feenstra, Z Euler, MJ Van Gils, LWE Rijsdijk, ...
Retrovirology 10 (1), 1-19, 2013
472013
Sequence harmony: detecting functional specificity from alignments
KA Feenstra, W Pirovano, K Krab, J Heringa
Nucleic acids research 35 (suppl_2), W495-W498, 2007
462007
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Articles 1–20