Richard Neher
Richard Neher
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Cited by
Cited by
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
TreeTime: maximum likelihood phylodynamic analysis
P Sagulenko, V Puller, R Neher
Virus Evolution 4 (1), vex042, 2018
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.
M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ...
Swiss medical weekly 150 (11-12), w20225-, 2020
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature 595 (7869), 707-712, 2021
Nextclade: clade assignment, mutation calling and quality control for viral genomes
I Aksamentov, C Roemer, EB Hodcroft, RA Neher
Journal of Open Source Software 6 (67), 3773, 2021
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss Medical Weekly 150 (1112), 2020
Novel SARS-CoV-2 variants: the pandemics within the pandemic
E Boehm, I Kronig, RA Neher, I Eckerle, P Vetter, L Kaiser
Clinical Microbiology and Infection 27 (8), 1109-1117, 2021
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell 181 (5), 990-996. e5, 2020
2019-novel Coronavirus (2019-nCoV): estimating the case fatality rate–a word of caution
M Battegay, R Kuehl, S Tschudin-Sutter, HH Hirsch, AF Widmer, ...
Swiss Medical Weekly 150 (0506), 2020
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
panX: pan-genome analysis and exploration
W Ding, F Baumdicker, RA Neher
Nucleic Acids Research 46 (1), e5-e5, 2017
Population genomics of intrapatient HIV-1 evolution
F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert, RA Neher
eLife 4, e11282, 2016
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ...
Nature Microbiology, 1-3, 2021
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ...
PLoS biology 19 (5), e3001236, 2021
Genealogies of rapidly adapting populations
RA Neher, O Hallatschek
Proceedings of the National Academy of Sciences 110 (2), 437-442, 2013
Recombination rate and selection strength in HIV intra-patient evolution
RA Neher, T Leitner
PLoS computational biology 6 (1), e1000660, 2010
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
RA Neher, T Bedford, RS Daniels, CA Russell, BI Shraiman
Proceedings of the National Academy of Sciences 113 (12), E1701-E1709, 2016
Predicting evolution from the shape of genealogical trees
RA Neher, CA Russell, BI Shraiman
eLife 3, e03568, 2014
Genetic draft, selective interference, and population genetics of rapid adaptation
RA Neher
Annual review of Ecology, evolution, and Systematics 44, 195-215, 2013
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