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Alon Shaiber
Alon Shaiber
PhD Candidate, University of Chicago
Verificeret mail på uchicago.edu
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Citeret af
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Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature microbiology 3 (7), 804-813, 2018
4742018
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature microbiology 6 (1), 3-6, 2021
4092021
Accurate and complete genomes from metagenomes
LX Chen, K Anantharaman, A Shaiber, AM Eren, JF Banfield
Genome research 30 (3), 315-333, 2020
3012020
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
1622020
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
1402021
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
A Shaiber, AD Willis, TO Delmont, S Roux, LX Chen, AC Schmid, ...
Genome biology 21, 1-35, 2020
1392020
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
STM Lee, SA Kahn, TO Delmont, A Shaiber, ÖC Esen, NA Hubert, ...
Microbiome 5, 1-10, 2017
862017
Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
BioRxiv, 2020
832020
Composite metagenome-assembled genomes reduce the quality of public genome repositories
A Shaiber, AM Eren
MBio 10 (3), 10.1128/mbio. 00725-19, 2019
792019
Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
692021
Gut microbes contribute to variation in solid organ transplant outcomes in mice
CM McIntosh, L Chen, A Shaiber, AM Eren, ML Alegre
Microbiome 6, 1-12, 2018
622018
The Wolbachia mobilome in Culex pipiens includes a putative plasmid
J Reveillaud, SR Bordenstein, C Cruaud, A Shaiber, ÖC Esen, M Weill, ...
Nature communications 10 (1), 1051, 2019
432019
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nat Microbiol 3: 804–813
TO Delmont, C Quince, A Shaiber, ÖC Esen, ST Lee, MS Rappé, ...
422018
High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes
F Trigodet, K Lolans, E Fogarty, A Shaiber, HG Morrison, L Barreiro, ...
Molecular ecology resources 22 (5), 1786-1802, 2022
322022
System-wide transcriptome damage and tissue identity loss in COVID-19 patients
J Park, J Foox, T Hether, DC Danko, S Warren, Y Kim, J Reeves, DJ Butler, ...
Cell Reports Medicine 3 (2), 2022
262022
Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
bioRxiv, 2020.04. 20.048066, 2020
242020
Metabolic independence drives gut microbial colonization and resilience in health and disease
AR Watson, J Füssel, I Veseli, JZ DeLongchamp, M Silva, F Trigodet, ...
Genome biology 24 (1), 78, 2023
232023
Adaptive ecological processes and metabolic independence drive microbial colonization and resilience in the human gut
AR Watson, J Füssel, I Veseli, JZ DeLongchamp, M Silva, F Trigodet, ...
bioRxiv, 2021.03. 02.433653, 2021
182021
Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps
J Park, J Foox, T Hether, D Danko, S Warren, Y Kim, J Reeves, DJ Butler, ...
bioRxiv, 2021.03. 08.434433, 2021
132021
Composite metagenome-assembled genomes reduce the quality of public genome repositories. mBio 10: e00725-19
A Shaiber, AM Eren, A Shaiber, AM Eren
122019
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Artikler 1–20