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David Koppstein
David Koppstein
DKTK/DKFZ c/o Universitätsklinikum Düsseldorf
Verified email at dkfz.de - Homepage
Title
Cited by
Cited by
Year
Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species
H Hezroni, D Koppstein, MG Schwartz, A Avrutin, DP Bartel, I Ulitsky
Cell reports 11 (7), 1110-1122, 2015
6232015
Global analyses of the effect of different cellular contexts on microRNA targeting
JW Nam, OS Rissland, D Koppstein, C Abreu-Goodger, CH Jan, ...
Molecular cell 53 (6), 1031-1043, 2014
3502014
Extensive alternative polyadenylation during zebrafish development
I Ulitsky, A Shkumatava, CH Jan, AO Subtelny, D Koppstein, GW Bell, ...
Genome research 22 (10), 2054-2066, 2012
3412012
The RNA polymerase “switch region” is a target for inhibitors
J Mukhopadhyay, K Das, S Ismail, D Koppstein, M Jang, B Hudson, ...
Cell 135 (2), 295-307, 2008
2762008
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ...
IScience 24 (3), 102151, 2021
1642021
Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays
A Agarwal, D Koppstein, J Rozowsky, A Sboner, L Habegger, LDW Hillier, ...
BMC genomics 11, 1-16, 2010
1632010
B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle
S Rizzetto, DNP Koppstein, J Samir, M Singh, JH Reed, CH Cai, AR Lloyd, ...
Bioinformatics 34 (16), 2846-2847, 2018
992018
Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation
D Koppstein, J Ashour, DP Bartel
Nucleic acids research 43 (10), 5052-5064, 2015
912015
Lymphoma driver mutations in the pathogenic evolution of an iconic human autoantibody
M Singh, KJL Jackson, JJ Wang, P Schofield, MA Field, D Koppstein, ...
Cell 180 (5), 878-894. e19, 2020
902020
Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention
W Emanuel, M Kirstin, F Vedran, D Asija, GL Theresa, A Roberto, ...
BioRxiv, 2020.05. 05.079194, 2020
842020
The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression
L Bujanic, O Shevchuk, N von Kügelgen, A Kalinina, K Ludwik, ...
Rna 28 (5), 766-779, 2022
322022
Tumor-infiltrating immune repertoires captured by single-cell barcoding in emulsion
AW Briggs, SJ Goldfless, S Timberlake, BJ Belmont, CR Clouser, ...
BioRxiv, 134841, 2017
302017
Single-cell sequencing reveals αβ chain pairing shapes the T cell repertoire
K Grigaityte, JA Carter, SJ Goldfless, EW Jeffery, RJ Hause, Y Jiang, ...
BioRxiv, 213462, 2017
262017
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy. iScience. 2021; 24 (3): 102151
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ...
J. ISCI, 2021
242021
Sites of transcription initiation drive mRNA isoform selection
C Alfonso-Gonzalez, I Legnini, S Holec, L Arrigoni, HC Ozbulut, F Mateos, ...
Cell 186 (11), 2438-2455. e22, 2023
142023
Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention. bioRxiv. 2020
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsie, F Klironomos, ...
Google Scholar, 2020
112020
Hpv-specific binding molecules
C Brandt, B Belmont, C Borges, SM Burleigh, A Croft, SJ Goldfless, ...
US Patent App. 16/652,379, 2021
62021
HPV-specific binding molecules
J Sissons, C Brandt, A Croft, A Ebens, H Peper
US Patent 11,072,660, 2021
42021
Directed, unbiased mapping of lentiviral integrations with next generation sequencing in CAR-T cells
TG Johnstone, R Chari, D Koppstein, RJ Hause, R Ponce, AW Briggs, ...
Cancer Research 78 (13_Supplement), 1541-1541, 2018
12018
The key features of SARS-CoV-2 leader and NSP1 required for viral escape of NSP1-mediated repression (preprint)
L Bujanic, O Shevchuk, N von Kuegelgen, K Ludwik, D Koppstein, ...
2021
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