|Knowledge-based analysis of microarray gene expression data by using support vector machines|
MPS Brown, WN Grundy, D Lin, N Cristianini, CW Sugnet, TS Furey, ...
Proceedings of the National Academy of Sciences 97 (1), 262-267, 2000
|An RNA gene expressed during cortical development evolved rapidly in humans|
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167-172, 2006
|RNA: A laboratory manual.|
DC Rio, M Ares Jr, GJ Hannon, TW Nilsen
RNA: a laboratory manual., 2011
|Context-dependent control of alternative splicing by RNA-binding proteins|
XD Fu, M Ares Jr
Nature Reviews Genetics 15 (10), 689-701, 2014
|A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons|
PL Boutz, P Stoilov, Q Li, CH Lin, G Chawla, K Ostrow, L Shiue, M Ares, ...
Genes & development 21 (13), 1636-1652, 2007
|Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay|
JZ Ni, L Grate, JP Donohue, C Preston, N Nobida, G O’Brien, L Shiue, ...
Genes & development 21 (6), 708-718, 2007
|Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays|
TA Clark, CW Sugnet, M Ares
Science 296 (5569), 907-910, 2002
|Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre‐ribosomal RNA and impairs formation of 18S ribosomal RNA.|
JMX Hughes, M Ares
The EMBO journal 10 (13), 4231-4239, 1991
|Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae|
M Spingola, L Grate, D Haussler, M Ares
Rna 5 (2), 221-234, 1999
|Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins|
SC Huelga, AQ Vu, JD Arnold, TY Liang, PP Liu, BY Yan, JP Donohue, ...
Cell reports 1 (2), 167-178, 2012
|Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy|
H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ...
Nature structural & molecular biology 17 (2), 187, 2010
|Transcriptome and genome conservation of alternative splicing events in humans and mice|
CW Sugnet, WJ Kent, M Ares Jr, D Haussler
Biocomputing 2004, 66-77, 2003
|RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site|
SA Elela, H Igel, M Ares Jr
Cell 85 (1), 115-124, 1996
|Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomycescerevisiae|
CA Davis, M Ares
Proceedings of the National Academy of Sciences 103 (9), 3262-3267, 2006
|The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain|
LT Gehman, P Stoilov, J Maguire, A Damianov, CH Lin, L Shiue, M Ares Jr, ...
Nature genetics 43 (7), 706, 2011
|Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy|
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
|Unusual intron conservation near tissue-regulated exons found by splicing microarrays|
CW Sugnet, K Srinivasan, TA Clark, G O'Brien, MS Cline, H Wang, ...
PLoS computational biology 2 (1), 2006
|Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing|
S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li, J Qiu, J Huang, ...
Molecular cell 50 (2), 223-235, 2013
|Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast|
CA Davis, L Grate, M Spingola, M Ares Jr
Nucleic acids research 28 (8), 1700-1706, 2000
|RBPmap: a web server for mapping binding sites of RNA-binding proteins|
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014