Manuel Ares, Jr.
Cited by
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Knowledge-based analysis of microarray gene expression data by using support vector machines
MPS Brown, WN Grundy, D Lin, N Cristianini, CW Sugnet, TS Furey, ...
Proceedings of the National Academy of Sciences 97 (1), 262-267, 2000
RNA: A laboratory manual.
DC Rio, M Ares Jr, GJ Hannon, TW Nilsen
RNA: a laboratory manual., 2011
An RNA gene expressed during cortical development evolved rapidly in humans
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167-172, 2006
Context-dependent control of alternative splicing by RNA-binding proteins
XD Fu, M Ares Jr
Nature Reviews Genetics 15 (10), 689-701, 2014
A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons
PL Boutz, P Stoilov, Q Li, CH Lin, G Chawla, K Ostrow, L Shiue, M Ares, ...
Genes & development 21 (13), 1636-1652, 2007
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
JZ Ni, L Grate, JP Donohue, C Preston, N Nobida, G O’Brien, L Shiue, ...
Genes & development 21 (6), 708-718, 2007
Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
TA Clark, CW Sugnet, M Ares Jr
Science 296 (5569), 907-910, 2002
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins
SC Huelga, AQ Vu, JD Arnold, TY Liang, PP Liu, BY Yan, JP Donohue, ...
Cell reports 1 (2), 167-178, 2012
RBPmap: a web server for mapping binding sites of RNA-binding proteins
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014
Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre‐ribosomal RNA and impairs formation of 18S ribosomal RNA.
JMX Hughes, M Ares Jr
The EMBO journal 10 (13), 4231-4239, 1991
Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae
M Spingola, L Grate, D Haussler, M Ares
Rna 5 (2), 221-234, 1999
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ...
Nature structural & molecular biology 17 (2), 187-193, 2010
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain
LT Gehman, P Stoilov, J Maguire, A Damianov, CH Lin, L Shiue, M Ares Jr, ...
Nature genetics 43 (7), 706-711, 2011
Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing
S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li, J Qiu, J Huang, ...
Molecular cell 50 (2), 223-235, 2013
Transcriptome and genome conservation of alternative splicing events in humans and mice
CW Sugnet, WJ Kent, M Ares Jr, D Haussler
Biocomputing 2004, 66-77, 2003
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
et al. Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ
eLife 4, e06416, 2015
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
CA Davis, M Ares Jr
Proceedings of the National Academy of Sciences 103 (9), 3262-3267, 2006
RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site
S Abou Elela, H Igel, M Ares
Cell 85 (1), 115-124, 1996
Unusual intron conservation near tissue-regulated exons found by splicing microarrays
CW Sugnet, K Srinivasan, TA Clark, G O'Brien, MS Cline, H Wang, ...
PLoS computational biology 2 (1), e4, 2006
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