| A human gut microbial gene catalogue established by metagenomic sequencing J Qin, R Li, J Raes, M Arumugam, KS Burgdorf, C Manichanh, T Nielsen, ... nature 464 (7285), 59-65, 2010 | 10419 | 2010 |
| SignalP 4.0: discriminating signal peptides from transmembrane regions TN Petersen, S Brunak, G Von Heijne, H Nielsen Nature methods 8 (10), 785-786, 2011 | 9152 | 2011 |
| Improved prediction of signal peptides: SignalP 3.0 JD Bendtsen, H Nielsen, G Von Heijne, S Brunak Journal of molecular biology 340 (4), 783-795, 2004 | 7725 | 2004 |
| Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. H Nielsen, J Engelbrecht, S Brunak, G Von Heijne Protein engineering 10 (1), 1-6, 1997 | 6621 | 1997 |
| Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180, 2011 | 6279 | 2011 |
| Predicting subcellular localization of proteins based on their N-terminal amino acid sequence O Emanuelsson, H Nielsen, S Brunak, G Von Heijne Journal of molecular biology 300 (4), 1005-1016, 2000 | 4904 | 2000 |
| Locating proteins in the cell using TargetP, SignalP and related tools O Emanuelsson, S Brunak, G Von Heijne, H Nielsen Nature protocols 2 (4), 953-971, 2007 | 3568 | 2007 |
| Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013 | 3541 | 2013 |
| Sequence and structure-based prediction of eukaryotic protein phosphorylation sites N Blom, S Gammeltoft, S Brunak Journal of molecular biology 294 (5), 1351-1362, 1999 | 3522 | 1999 |
| Assessing the accuracy of prediction algorithms for classification: an overview P Baldi, S Brunak, Y Chauvin, CAF Andersen, H Nielsen Bioinformatics 16 (5), 412-424, 2000 | 2362 | 2000 |
| Prediction of post‐translational glycosylation and phosphorylation of proteins from the amino acid sequence N Blom, T Sicheritz‐Pontén, R Gupta, S Gammeltoft, S Brunak Proteomics 4 (6), 1633-1649, 2004 | 2042 | 2004 |
| Bioinformatics: the machine learning approach P Baldi, S Brunak MIT press, 2001 | 1953 | 2001 |
| Mining electronic health records: towards better research applications and clinical care PB Jensen, LJ Jensen, S Brunak Nature Reviews Genetics 13 (6), 395-405, 2012 | 1509 | 2012 |
| Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis JV Olsen, M Vermeulen, A Santamaria, C Kumar, ML Miller, LJ Jensen, ... Science signaling 3 (104), ra3-ra3, 2010 | 1503 | 2010 |
| Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262-266, 2015 | 1449 | 2015 |
| An integrated catalog of reference genes in the human gut microbiome J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ... Nature biotechnology 32 (8), 834-841, 2014 | 1446 | 2014 |
| SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019 | 1373 | 2019 |
| SignalP 5.0 improves signal peptide predictions using deep neural networks JJA Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, O Winther, ... Nat Biotechnol 37 (4), 420-423, 2019 | 1350 | 2019 |
| Population genomics of bronze age Eurasia ME Allentoft, M Sikora, KG Sjögren, S Rasmussen, M Rasmussen, ... Nature 522 (7555), 167-172, 2015 | 1335 | 2015 |
| Prediction of lipoprotein signal peptides in Gram‐negative bacteria AS Juncker, H Willenbrock, G Von Heijne, S Brunak, H Nielsen, A Krogh Protein Science 12 (8), 1652-1662, 2003 | 1235 | 2003 |
