Nicola Bonzanni
Title
Cited by
Cited by
Year
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model
N Bonzanni, A Garg, KA Feenstra, J Schütte, S Kinston, ...
Bioinformatics 29 (13), i80-i88, 2013
802013
Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development
N Bonzanni, E Krepska, KA Feenstra, W Fokkink, T Kielmann, H Bal, ...
Bioinformatics 25 (16), 2049-2056, 2009
622009
An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability
J Schütte, H Wang, S Antoniou, A Jarratt, NK Wilson, J Riepsaame, ...
Elife 5, e11469, 2016
552016
PTEN loss in E-cadherin-deficient mouse mammary epithelial cells rescues apoptosis and results in development of classical invasive lobular carcinoma
MC Boelens, M Nethe, S Klarenbeek, JR de Ruiter, E Schut, N Bonzanni, ...
Cell reports 16 (8), 2087-2101, 2016
442016
What can formal methods bring to systems biology?
N Bonzanni, KA Feenstra, W Fokkink, E Krepska
International Symposium on Formal Methods, 16-22, 2009
372009
Design issues for qualitative modelling of biological cells with Petri nets
E Krepska, N Bonzanni, A Feenstra, W Fokkink, T Kielmann, H Bal, ...
International Workshop on Formal Methods in Systems Biology, 48-62, 2008
272008
Petri nets are a biologist’s best friend
N Bonzanni, KA Feenstra, W Fokkink, J Heringa
International Conference on Formal Methods in Macro-Biology, 102-116, 2014
152014
BioASF: a framework for automatically generating executable pathway models specified in BioPAX
R Haydarlou, A Jacobsen, N Bonzanni, KA Feenstra, S Abeln, J Heringa
Bioinformatics 32 (12), i60-i69, 2016
142016
High-throughput immunogenetics reveals a lack of physiological T cell clusters in patients with autoimmune cytopenias
D Simnica, S Schliffke, C Schultheiß, N Bonzanni, LF Fanchi, N Akyüz, ...
Frontiers in immunology 10, 1897, 2019
102019
Response of metastatic mouse invasive lobular carcinoma to mTOR inhibition is partly mediated by the adaptive immune system
S Klarenbeek, CW Doornebal, SM Kas, N Bonzanni, J Bhin, ...
Oncoimmunology 9 (1), 1724049, 2020
72020
Deep sequencing of bone marrow microenvironments of patients with del (5q) myelodysplastic syndrome reveals imprints of antigenic selection as well as generation of novel T …
T Mährle, N Akyüz, P Fuchs, N Bonzanni, D Simnica, U Germing, ...
haematologica 104 (7), 1355, 2019
72019
ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites
SH Lelieveld, J Schütte, MJJ Dijkstra, P Bawono, SJ Kinston, B Göttgens, ...
Nucleic acids research 44 (8), e72-e72, 2016
72016
Modeling symport/antiport p systems with a class of hierarchical Petri nets
L Bernardinello, N Bonzanni, M Mascheroni, L Pomello
International Workshop on Membrane Computing, 124-137, 2007
62007
Next‐Generation Immunosequencing Reveals Pathological T‐Cell Architecture in Autoimmune Hepatitis
C Schultheiß, D Simnica, E Willscher, A Oberle, L Fanchi, N Bonzanni, ...
Hepatology 73 (4), 1436-1448, 2021
52021
The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae
N Bonzanni, N Zhang, SG Oliver, J Fisher
Bioinformatics 27 (13), i283-i287, 2011
52011
Towards Executable Biology
N Bonzanni
VU University, 2012
12012
Monitoring the effect of immunomodulatory treatment on the immune repertoire using the IGX platform
P Fuchs, H van den Ham, N Akyüz, D Simnica, M Binder, N Bonzanni
European Journal of Cancer 110, S29-S30, 2019
2019
Peripheral blood T cell repertoires are biased in patients with autoimmune cytopenias showing unique T cell clusters with common antigen recognition
D Statovci, S Schliffke, N Akyuez, B Goesch, N Bonzanni, C Casar, ...
ONCOLOGY RESEARCH AND TREATMENT 41, 103-103, 2018
2018
A fully validated blood stem/progenitor cell regulatory network reveals mechanisms of cell state stabilisation
J Schütte, H Wang, A Jarrett, J Riepsaame, N Wilson, S Antoniou, ...
Experimental Hematology 43 (9), S47, 2015
2015
PI3K signalling in mouse models of invasive lobular breast cancer
S Klarenbeek, C Doornebal, N Bonzanni, S Kas, I van der Heijden, ...
Journal of Comparative Pathology 1 (152), 46, 2015
2015
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Articles 1–20