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Laraib Iqbal Malik
Laraib Iqbal Malik
Verified email at abbvie.com
Title
Cited by
Cited by
Year
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
A Srivastava, L Malik, T Smith, I Sudbery, R Patro
Genome biology 20, 1-16, 2019
1892019
Alignment and mapping methodology influence transcript abundance estimation
A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ...
Genome biology 21 (1), 1-29, 2020
1322020
Rich chromatin structure prediction from Hi-C data
L Malik, R Patro
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
282017
Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification
H Sarkar, M Zakeri, L Malik, R Patro
Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018
252018
Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis
L Malik, F Almodaresi, R Patro
Bioinformatics 34 (19), 3265-3272, 2018
142018
A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification
A Srivastava, L Malik, H Sarkar, R Patro
Bioinformatics 36 (Supplement_1), i292-i299, 2020
112020
RTA occupancy of the origin of lytic replication during murine gammaherpesvirus 68 reactivation from B cell latency
AL Santana, DG Oldenburg, V Kirillov, L Malik, Q Dong, R Sinayev, ...
Pathogens 6 (1), 9, 2017
112017
Accurate, Fast and Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
A Srivastava, H Sarkar, L Malik, R Patro
arXiv preprint arXiv:1604.03250, 2016
102016
Combinatorial loss of the enzymatic activities of viral uracil-DNA glycosylase and viral dUTPase impairs murine gammaherpesvirus pathogenesis and leads to increased …
Q Dong, KR Smith, DG Oldenburg, M Shapiro, WR Schutt, L Malik, ...
MBio 9 (5), 10.1128/mbio. 01831-18, 2018
92018
RTA Occupancy of the Origin of Lytic Replication during Murine Gammaherpesvirus 68 Reactivation from B Cell Latency. Pathogens. 2017; 6 (1)
AL Santana, DG Oldenburg, V Kirillov, L Malik, Q Dong, R Sinayev
Epub 2017/02/18. https://doi. org/10.3390/pathogens6010009 PMID: 28212352, 0
6
Combinatorial loss of the enzymatic activities of viral uracil-DNA glycosylase and viral dUTPase impairs murine gammaherpes virus pathogenesis and leads to increased …
Q Dong, KR Smith, DG Oldenburg, M Shapiro, WR Schutt, L Malik, ...
12018
Algorithms for Improving Quantification Accuracy in Reference Based and de novo Transcriptomics
LI Malik
State University of New York at Stony Brook, 2020
2020
Combinatorial Loss of the Enzymatic Activities of Viral Uracil-DNA Glycosylase and Viral dUTPase Impairs Murine Gammaherpesvirus Pathogenesis and Leads to Increased …
Q Dong, KR Smith, DG Oldenburg, M Shapiro, WR Schutt, L Malik, ...
American Society for Microbiology, 2018
2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics
H Sarkar, M Zakeri, L Malik, R Patro, ...
2018
Towards Selective-Alignment: Producing Accurate And Sensitive Alignments Using Quasi-Mapping
H Sarkar, M Zakeri, L Malik, R Patro
bioRxiv, 138800, 2017
2017
Graph regularized, semi-supervised learning improves annotation of de novo transcriptomes
LI Malik, S Thatipally, N Junneti, R Patro
bioRxiv, 089417, 2016
2016
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Articles 1–16