| Typing methods based on whole genome sequencing data L Uelze, J Grützke, M Borowiak, JA Hammerl, K Juraschek, C Deneke, ... One Health Outlook 2, 1-19, 2020 | 134 | 2020 |
| An early American smallpox vaccine based on horsepox L Schrick, SH Tausch, PW Dabrowski, CR Damaso, J Esparza, A Nitsche New England Journal of Medicine 377 (15), 1491-1492, 2017 | 81 | 2017 |
| Fishing in the soup–pathogen detection in food safety using metabarcoding and metagenomic sequencing J Grützke, B Malorny, JA Hammerl, A Busch, SH Tausch, H Tomaso, ... Frontiers in microbiology 10, 463591, 2019 | 58 | 2019 |
| Species-specific quality control, assembly and contamination detection in microbial isolate sequences with AQUAMIS C Deneke, H Brendebach, L Uelze, M Borowiak, B Malorny, SH Tausch Genes 12 (5), 644, 2021 | 51 | 2021 |
| Distantly related rotaviruses in common shrews, Germany, 2004–2014 R Johne, SH Tausch, J Grützke, A Falkenhagen, C Patzina-Mehling, ... Emerging infectious diseases 25 (12), 2310, 2019 | 47 | 2019 |
| Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data L Uelze, M Borowiak, C Deneke, I Szabó, J Fischer, SH Tausch, ... Applied and Environmental Microbiology 86 (5), e02265-19, 2020 | 42 | 2020 |
| Outcome of different sequencing and assembly approaches on the detection of plasmids and localization of antimicrobial resistance genes in commensal Escherichia coli K Juraschek, M Borowiak, SH Tausch, B Malorny, A Käsbohrer, S Otani, ... Microorganisms 9 (3), 598, 2021 | 39 | 2021 |
| PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples A Andrusch, PW Dabrowski, J Klenner, SH Tausch, C Kohl, AA Osman, ... Bioinformatics 34 (17), i715-i721, 2018 | 35 | 2018 |
| LiveKraken––real-time metagenomic classification of illumina data SH Tausch, B Strauch, A Andrusch, TP Loka, MS Lindner, A Nitsche, ... Bioinformatics 34 (21), 3750-3752, 2018 | 31 | 2018 |
| Whole genome sequence analysis of a prototype strain of the novel putative rotavirus species L R Johne, K Schilling-Loeffler, RG Ulrich, SH Tausch Viruses 14 (3), 462, 2022 | 28 | 2022 |
| Decentralized investigation of bacterial outbreaks based on hashed cgMLST C Deneke, L Uelze, H Brendebach, SH Tausch, B Malorny Frontiers in Microbiology 12, 649517, 2021 | 26 | 2021 |
| HiLive: real-time mapping of illumina reads while sequencing MS Lindner, B Strauch, JM Schulze, SH Tausch, PW Dabrowski, ... Bioinformatics 33 (6), 917-319, 2017 | 26 | 2017 |
| First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production A Irrgang, SH Tausch, N Pauly, M Grobbel, A Kaesbohrer, JA Hammerl Microorganisms 8 (10), 1593, 2020 | 24 | 2020 |
| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ... Gigascience 11, giac003, 2022 | 23 | 2022 |
| Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany L Uelze, N Becker, M Borowiak, U Busch, A Dangel, C Deneke, J Fischer, ... Frontiers in microbiology 12, 626941, 2021 | 23 | 2021 |
| Reliable variant calling during runtime of Illumina sequencing TP Loka, SH Tausch, BY Renard Scientific Reports 9 (1), 16502, 2019 | 20 | 2019 |
| Whole Genome Characterization of Orthopoxvirus (OPV) Abatino, a Zoonotic Virus Representing a Putative Novel Clade of Old World Orthopoxviruses CEM Gruber, E Giombini, M Selleri, SH Tausch, A Andrusch, A Tyshaieva, ... Viruses 10 (10), 546, 2018 | 17 | 2018 |
| German-wide interlaboratory study compares consistency, accuracy and reproducibility of whole-genome short read sequencing L Uelze, M Borowiak, M Bönn, E Brinks, C Deneke, T Hankeln, S Kleta, ... Frontiers in Microbiology 11, 573972, 2020 | 15 | 2020 |
| Berlin squirrelpox virus, a new poxvirus in red squirrels, Berlin, Germany G Wibbelt, SH Tausch, PW Dabrowski, O Kershaw, A Nitsche, L Schrick Emerging Infectious Diseases 23 (10), 1726, 2017 | 15 | 2017 |
| RAMBO-K: rapid and sensitive removal of background sequences from next generation sequencing data SH Tausch, BY Renard, A Nitsche, PW Dabrowski PLoS One 10 (9), e0137896, 2015 | 15 | 2015 |
