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Tomohiko Hayashi
Tomohiko Hayashi
Graduate School of Science and Thechnology, Niigata University
Verificeret mail på eng.niigata-u.ac.jp
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Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
T Hayashi, H Oshima, T Mashima, T Nagata, M Katahira, M Kinoshita
Nucleic acids research 42 (11), 6861-6875, 2014
822014
Accurate evaluation of the absorption maxima of retinal proteins based on a hybrid QM/MM method
A Matsuura, H Sato, H Houjou, S Saito, T Hayashi, M Sakurai
Journal of computational chemistry 27 (14), 1623-1630, 2006
292006
Universal effects of solvent species on the stabilized structure of a protein
T Hayashi, M Inoue, S Yasuda, E Petretto, T Škrbić, A Giacometti, ...
The Journal of Chemical Physics 149 (4), 045105, 2018
272018
Unraveling protein folding mechanism by analyzing the hierarchy of models with increasing level of detail
T Hayashi, S Yasuda, T Škrbić, A Giacometti, M Kinoshita
The Journal of Chemical Physics 147 (12), 125102, 2017
252017
Effects of salt or cosolvent addition on solubility of a hydrophobic solute in water: Relevance to those on thermal stability of a protein
S Murakami, T Hayashi, M Kinoshita
The Journal of Chemical Physics 146 (5), 055102, 2017
252017
Unified elucidation of the entropy-driven and-opposed hydrophobic effects
M Kinoshita, T Hayashi
Physical Chemistry Chemical Physics 19 (38), 25891-25904, 2017
252017
An accurate and rapid method for calculating hydration free energies of a variety of solutes including proteins
S Hikiri, T Hayashi, M Inoue, T Ekimoto, M Ikeguchi, M Kinoshita
The Journal of Chemical Physics 150 (17), 175101, 2019
232019
Mechanism of globule-to-coil transition of poly (N-isopropylacrylamide) in water: Relevance to cold denaturation of a protein
M Inoue, T Hayashi, S Hikiri, M Ikeguchi, M Kinoshita
Journal of Molecular Liquids 292, 111374, 2019
212019
Mechanism of one-to-many molecular recognition accompanying target-dependent structure formation: for the tumor suppressor p53 protein as an example
T Hayashi, H Oshima, S Yasuda, M Kinoshita
The Journal of Physical Chemistry B 119 (44), 14120-14129, 2015
212015
Water based on a molecular model behaves like a hard-sphere solvent for a nonpolar solute when the reference interaction site model and related theories are employed
T Hayashi, H Oshima, Y Harano, M Kinoshita
Journal of Physics: Condensed Matter 28 (34), 344003, 2016
202016
ATP-induced conformational changes of nucleotide-binding domains in an ABC transporter. importance of the water-mediated entropic force
T Hayashi, S Chiba, Y Kaneta, T Furuta, M Sakurai
The Journal of Physical Chemistry B 118 (44), 12612-12620, 2014
192014
Statistical Thermodynamics for Actin-Myosin Binding: The Crucial Importance of Hydration Effects
H Oshima, T Hayashi, M Kinoshita
Biophysical journal 110 (11), 2496-2506, 2016
182016
Hydration properties of a protein at low and high pressures: Physics of pressure denaturation
M Inoue, T Hayashi, S Hikiri, M Ikeguchi, M Kinoshita
The Journal of Chemical Physics 152 (6), 065103, 2020
172020
How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?
T Hayashi, S Yasuda, K Suzuki, T Akiyama, K Kanehara, K Kojima, ...
The Journal of Physical Chemistry B 124 (6), 990-1000, 2020
162020
Development and structural determination of an anti-PrP C aptamer that blocks pathological conformational conversion of prion protein
T Mashima, JH Lee, YO Kamatari, T Hayashi, T Nagata, F Nishikawa, ...
Scientific Reports 10 (1), 1-11, 2020
152020
Dynamics and structural changes induced by ATP and/or substrate binding in the inward-facing conformation state of P-glycoprotein
Y Watanabe, WL Hsu, S Chiba, T Hayashi, T Furuta, M Sakurai
Chemical Physics Letters 557, 145-149, 2013
152013
How Does the Recently Discovered Peptide MIP Exhibit Much Higher Binding Affinity than an Anticancer Protein p53 for an Oncoprotein MDM2?
T Yamada, T Hayashi, S Hikiri, N Kobayashi, H Yanagawa, M Ikeguchi, ...
Journal of chemical information and modeling 59 (8), 3533-3544, 2019
132019
Theoretical study on the absorption maxima of real GFPs
A Matsuura, T Hayashi, H Sato, A Takahashi, M Sakurai
Chemical Physics Letters 484 (4-6), 324-329, 2010
132010
Comparison based on statistical thermodynamics between globule-to-coil transition of poly (N-isopropylacrylamide) and cold denaturation of a protein
M Inoue, T Hayashi, S Hikiri, M Ikeguchi, M Kinoshita
Journal of Molecular Liquids 317, 114129, 2020
122020
On the physics of thermal-stability changes upon mutations of a protein
S Murakami, H Oshima, T Hayashi, M Kinoshita
The Journal of chemical physics 143 (12), 09B619_1, 2015
122015
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