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Emilie Muller
Emilie Muller
UMR7156 CNRS-Université de Strasbourg/Luxembourg Center for Systems Biomedicine, University of
Verified email at unistra.fr
Title
Cited by
Cited by
Year
Colonization and succession within the human gut microbiome by archaea, bacteria, and microeukaryotes during the first year of life
L Wampach, A Heintz-Buschart, A Hogan, EEL Muller, S Narayanasamy, ...
Frontiers in microbiology 8, 738, 2017
2812017
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources
S Vuilleumier, L Chistoserdova, MC Lee, F Bringel, A Lajus, Y Zhou, ...
PloS one 4 (5), e5584, 2009
2732009
Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia
LW Hugerth, EEL Muller, YOO Hu, LAM Lebrun, H Roume, D Lundin, ...
PloS one 9 (4), e95567, 2014
2702014
A hundred years of activated sludge: time for a rethink
AR Sheik, EEL Muller, P Wilmes
Frontiers in microbiology 5, 47, 2014
1512014
A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems
M Calusinska, X Goux, M Fossépré, EEL Muller, P Wilmes, P Delfosse
Biotechnology for biofuels 11, 1-19, 2018
1502018
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, A Heintz-Buschart, M Herold, ...
Genome biology 17, 1-21, 2016
1472016
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
O Svartström, J Alneberg, N Terrapon, V Lombard, I de Bruijn, J Malmsten, ...
The ISME journal 11 (11), 2538-2551, 2017
1402017
A biomolecular isolation framework for eco-systems biology
H Roume, E El Muller, T Cordes, J Renaut, K Hiller, P Wilmes
The ISME journal 7 (1), 110-121, 2013
1172013
Complete genome sequences of six strains of the genus Methylobacterium
CJ Marx, F Bringel, L Chistoserdova, L Moulin, M Farhan Ul Haque, ...
Journal of Bacteriology 194 (17), 4746-4748, 2012
1112012
Lipid-based biofuel production from wastewater
EEL Muller, AR Sheik, P Wilmes
Current Opinion in Biotechnology 30, 9-16, 2014
1002014
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
H Roume, A Heintz-Buschart, EEL Muller, P May, VP Satagopam, ...
npj Biofilms and Microbiomes 1 (1), 1-11, 2015
992015
Using metabolic networks to resolve ecological properties of microbiomes
EEL Muller, K Faust, S Widder, M Herold, SM Arbas, P Wilmes
Current Opinion in Systems Biology 8, 73-80, 2018
882018
Condensing the omics fog of microbial communities
EEL Muller, E Glaab, P May, N Vlassis, P Wilmes
Trends in microbiology 21 (7), 325-333, 2013
852013
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ...
Nature communications 11 (1), 5281, 2020
842020
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
EEL Muller, N Pinel, CC Laczny, MR Hoopmann, S Narayanasamy, ...
Nature communications 5 (1), 5603, 2014
842014
Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample
H Roume, A Heintz-Buschart, EEL Muller, P Wilmes
Methods in enzymology 531, 219-236, 2013
702013
Dichloromethane-degrading bacteria in the genomic age
EEL Muller, F Bringel, S Vuilleumier
Research in Microbiology 162 (9), 869-876, 2011
702011
Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities
S Narayanasamy, ME E.L., S Abdul R., W Paul
microbial biotechnology, 2015
632015
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
S Martínez Arbas, S Narayanasamy, M Herold, LA Lebrun, ...
Nature microbiology 6 (1), 123-135, 2021
612021
Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4
EEL Muller, E Hourcade, Y Louhichi‐Jelail, P Hammann, S Vuilleumier, ...
Environmental Microbiology 13 (9), 2518-2535, 2011
602011
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Articles 1–20