Zhirong Bao
Zhirong Bao
Developmental Biology Program, Sloan-Kettering Institute
Verified email at mskcc.org
Cited by
Cited by
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ...
Nature 432 (7018), 695-716, 2004
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
LD Stein, Z Bao, D Blasiar, T Blumenthal, MR Brent, N Chen, A Chinwalla, ...
PLoS biology 1 (2), 2003
Automated de novo identification of repeat sequence families in sequenced genomes
Z Bao, SR Eddy
Genome research 12 (8), 1269-1276, 2002
Pack-MULE transposable elements mediate gene evolution in plants
N Jiang, Z Bao, X Zhang, SR Eddy, SR Wessler
Nature 431 (7008), 569-573, 2004
Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy
PJ Keller, AD Schmidt, A Santella, K Khairy, Z Bao, J Wittbrodt, ...
Nature methods 7 (8), 637-642, 2010
An active DNA transposon family in rice
N Jiang, Z Bao, X Zhang, H Hirochika, SR Eddy, SR McCouch, ...
Nature 421 (6919), 163-167, 2003
Automated cell lineage tracing in Caenorhabditis elegans
Z Bao, JI Murray, T Boyle, SL Ooi, MJ Sandel, RH Waterston
proceedings of the National Academy of Sciences 103 (8), 2707-2712, 2006
Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans
Y Wu, A Ghitani, R Christensen, A Santella, Z Du, G Rondeau, Z Bao, ...
Proceedings of the National Academy of Sciences 108 (43), 17708-17713, 2011
Genomics in C. elegans: so many genes, such a little worm
LDW Hillier, A Coulson, JI Murray, Z Bao, JE Sulston, RH Waterston
Genome research 15 (12), 1651-1660, 2005
Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy
Y Wu, P Wawrzusin, J Senseney, RS Fischer, R Christensen, A Santella, ...
Nature biotechnology 31 (11), 1032, 2013
Automated analysis of embryonic gene expression with cellular resolution in C. elegans
JI Murray, Z Bao, TJ Boyle, ME Boeck, BL Mericle, TJ Nicholas, Z Zhao, ...
Nature methods 5 (8), 703, 2008
Multidimensional regulation of gene expression in the C. elegans embryo
JI Murray, TJ Boyle, E Preston, D Vafeados, B Mericle, P Weisdepp, ...
Genome research 22 (7), 1282-1294, 2012
Dual-view plane illumination microscopy for rapid and spatially isotropic imaging
A Kumar, Y Wu, R Christensen, P Chandris, W Gandler, E McCreedy, ...
Nature protocols 9 (11), 2555-2573, 2014
Chiral forces organize left-right patterning in C. elegans by uncoupling midline and anteroposterior axis
C Pohl, Z Bao
Developmental cell 19 (3), 402-412, 2010
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
TJ Boyle, Z Bao, JI Murray, CL Araya, RH Waterston
BMC bioinformatics 7 (1), 275, 2006
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
JI Murray, Z Bao, TJ Boyle, RH Waterston
Nature protocols 1 (3), 1468, 2006
A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D
A Santella, Z Du, S Nowotschin, AK Hadjantonakis, Z Bao
BMC bioinformatics 11 (1), 580, 2010
Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice
N Jiang, Z Bao, S Temnykh, Z Cheng, J Jiang, RA Wing, SR McCouch, ...
Genetics 161 (3), 1293-1305, 2002
Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
Z Zhao, TJ Boyle, Z Bao, JI Murray, B Mericle, RH Waterston
Developmental biology 314 (1), 93-99, 2008
De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis
Z Du, A Santella, F He, M Tiongson, Z Bao
Cell 156 (1-2), 359-372, 2014
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