Xun Lan
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iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition
B Liu, L Fang, R Long, X Lan, KC Chou
Bioinformatics 32 (3), 362-369, 2016
iDNA-Prot| dis: identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition
B Liu, J Xu, X Lan, R Xu, J Zhou, X Wang, KC Chou
PloS one 9 (9), e106691, 2014
Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels
NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ...
PLoS genetics 10 (9), e1004663, 2014
Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages
X Lan, H Witt, K Katsumura, Z Ye, Q Wang, EH Bresnick, PJ Farnham, ...
Nucleic acids research 40 (16), 7690-7704, 2012
Caffeine protects against MPTP‐induced blood‐brain barrier dysfunction in mouse striatum
X Chen, X Lan, I Roche, R Liu, JD Geiger
Journal of neurochemistry 107 (4), 1147-1157, 2008
Tumour-associated macrophages secrete pleiotrophin to promote PTPRZ1 signalling in glioblastoma stem cells for tumour growth
Y Shi, YF Ping, W Zhou, ZC He, C Chen, BSJ Bian, L Zhang, L Chen, ...
Nature communications 8 (1), 1-17, 2017
Functional and genetic analysis of viral receptor ACE2 orthologs reveals a broad potential host range of SARS-CoV-2
Y Liu, G Hu, Y Wang, W Ren, X Zhao, F Ji, Y Zhu, F Feng, M Gong, X Ju, ...
Proceedings of the National Academy of Sciences 118 (12), e2025373118, 2021
Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals.
X Lan, J Pritchard
Science 352, 1009--1013, 2016
Using amino acid physicochemical distance transformation for fast protein remote homology detection
B Liu, X Wang, Q Chen, Q Dong, X Lan
Public Library of Science 7 (9), e46633, 2012
Large-scale clonal analysis resolves aging of the mouse hematopoietic stem cell compartment
R Yamamoto, AC Wilkinson, J Ooehara, X Lan, CY Lai, Y Nakauchi, ...
Cell stem cell 22 (4), 600-607. e4, 2018
Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263
S Frietze, X Lan, VX Jin, PJ Farnham
Journal of Biological Chemistry 285 (2), 1393-1403, 2010
Neurogenic responses to amyloid-beta plaques in the brain of Alzheimer’s disease-like transgenic (pPDGF-APPSw, Ind) mice
L Gan, S Qiao, X Lan, L Chi, C Luo, L Lien, QY Liu, R Liu
Neurobiology of disease 29 (1), 71-80, 2008
Ligand-dependent genomic function of glucocorticoid receptor in triple-negative breast cancer
Z Chen, X Lan, D Wu, B Sunkel, Z Ye, J Huang, Z Liu, SK Clinton, VX Jin, ...
Nature communications 6 (1), 1-8, 2015
Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer
Z Chen, X Lan, JM Thomas‐Ahner, D Wu, X Liu, Z Ye, L Wang, B Sunkel, ...
The EMBO journal 34 (4), 502-516, 2015
High resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technology
X Lan, C Adams, M Landers, M Dudas, D Krissinger, G Marnellos, ...
PloS one 6 (7), e22226, 2011
Expression profiling and validation of potential reference genes during Paralichthys olivaceus embryogenesis
Q Zhong, Q Zhang, Z Wang, J Qi, Y Chen, S Li, Y Sun, C Li, X Lan
Marine Biotechnology 10 (3), 310-318, 2008
Epigenetic Silencing Mediated through Activated PI3K/AKT Signaling in Breast CancerPI3K/AKT Oncogenic Signaling Leads to Epigenetic Silencing
T Zuo, TM Liu, X Lan, YI Weng, R Shen, F Gu, YW Huang, ...
Cancer research 71 (5), 1752-1762, 2011
Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells
SA Bapat, V Jin, N Berry, C Balch, N Sharma, N Kurrey, S Zhang, F Fang, ...
Epigenetics 5 (8), 716-729, 2010
W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data
X Lan, R Bonneville, J Apostolos, W Wu, VX Jin
Bioinformatics 27 (3), 428-430, 2011
Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer
PY Hsu, HK Hsu, X Lan, L Juan, PS Yan, J Labanowska, N Heerema, ...
Cancer cell 24 (2), 197-212, 2013
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