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Romain Studer
Romain Studer
BenevolentAI
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Year
CATH: comprehensive structural and functional annotations for genome sequences
I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ...
Nucleic acids research 43 (D1), D376-D381, 2015
4452015
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
I Sillitoe, AL Cuff, BH Dessailly, NL Dawson, N Furnham, D Lee, JG Lees, ...
Nucleic Acids Research 41 (D1), D490-D498, 2013
2672013
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz
PLoS Computational Biology 8 (5), e1002514, 2012
2202012
How confident can we be that orthologs are similar, but paralogs differ?
RA Studer, M Robinson-Rechavi
Trends in Genetics 25 (5), 210-216, 2009
1822009
Epithelial Sodium Transport and its control by aldosterone: The Story of our Internal Environment revisited
BC Rossier, ME Baker, RA Studer
Physiological Reviews 95 (1), 297-340, 2015
1782015
Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes
RA Studer, BH Dessailly, CA Orengo
Biochemical Journal 449 (3), 581-594, 2013
1732013
Stability-activity tradeoffs constrain the adaptive evolution of RubisCO
RA Studer, PA Christin, MA Williams, CA Orengo
Proceedings of the National Academy of Sciences, 201310811, 2014
1372014
Vitellogenin underwent subfunctionalization to acquire caste and behavioral specific expression in the harvester ant Pogonomyrmex barbatus
M Corona, R Libbrecht, Y Wurm, O Riba-Grognuz, RA Studer, L Keller
PLoS Genet 9 (8), e1003730, 2013
872013
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
RA Studer, S Penel, L Duret, M Robinson-Rechavi
Genome research 18 (9), 1393-1402, 2008
872008
Origin of the response to adrenal and sex steroids: Roles of promiscuity and co-evolution of enzymes and steroid receptors
ME Baker, DR Nelson, RA Studer
The Journal of steroid biochemistry and molecular biology 151, 12-24, 2015
792015
Evolution of protein phosphorylation across 18 fungal species
RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ...
Science 354 (6309), 229-232, 2016
712016
Adaptive divergence of ancient gene duplicates in the avian MHC class II β
R Burri, N Salamin, RA Studer, A Roulin, L Fumagalli
Molecular biology and evolution 27 (10), 2360-2374, 2010
702010
Selectome update: quality control and computational improvements to a database of positive selection
S Moretti, B Laurenczy, WH Gharib, B Castella, A Kuzniar, H Schabauer, ...
Nucleic acids research 42 (D1), D917-D921, 2014
622014
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
JG Lees, D Lee, RA Studer, NL Dawson, I Sillitoe, S Das, C Yeats, ...
Nucleic acids research 42 (D1), D240-D245, 2014
532014
Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport
RA Studer, E Person, M Robinson-Rechavi, BC Rossier
Physiological Genomics 43 (13), 844-854, 2011
482011
Selectome: a database of positive selection
E Proux, RA Studer, S Moretti, M Robinson-Rechavi
Nucleic acids research 37 (suppl 1), D404-D407, 2009
472009
Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects
T Iwema, A Chaumot, RA Studer, M Robinson-Rechavi, IML Billas, ...
Molecular biology and evolution 26 (4), 753-768, 2009
452009
Conserved phosphorylation hotspots in eukaryotic protein domain families
MJ Strumillo, M Oplova, C Vieitez, D Ochoa, M Shahraz, BP Busby, ...
bioRxiv, 391185, 2018
292018
Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life
A Faddeeva, RA Studer, K Kraaijeveld, D Sie, B Ylstra, J Mariën, ...
PloS one 10 (6), e0130600, 2015
282015
Positive selection during the evolution of the blood coagulation factors in the context of their disease-causing mutations
PM Rallapalli, CA Orengo, RA Studer, SJ Perkins
Molecular Biology and Evolution, 2014
232014
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