Michael MacCoss
Michael MacCoss
Professor of Genome Sciences, University of Washington
Verified email at uw.edu - Homepage
TitleCited byYear
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
B MacLean, DM Tomazela, N Shulman, M Chambers, GL Finney, ...
Bioinformatics 26 (7), 966-968, 2010
Semi-supervised learning for peptide identification from shotgun proteomics datasets
L Käll, JD Canterbury, J Weston, WS Noble, MJ MacCoss
Nature methods 4 (11), 923-925, 2007
Aminoglycoside antibiotics induce bacterial biofilm formation
LR Hoffman, DA D'Argenio, MJ MacCoss, Z Zhang, RA Jones, SI Miller
Nature 436 (7054), 1171-1175, 2005
A cross-platform toolkit for mass spectrometry and proteomics
MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ...
Nature biotechnology 30 (10), 918-920, 2012
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
A method for the comprehensive proteomic analysis of membrane proteins
CC Wu, MJ MacCoss, KE Howell, JR Yates
Nature biotechnology 21 (5), 532-538, 2003
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
Shotgun identification of protein modifications from protein complexes and lens tissue
MJ MacCoss, WH McDonald, A Saraf, R Sadygov, JM Clark, JJ Tasto, ...
Proceedings of the National Academy of Sciences 99 (12), 7900-7905, 2002
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
L Käll, JD Storey, MJ MacCoss, WS Noble
Journal of proteome research 7 (01), 29-34, 2008
Molecular architecture and assembly of the DDB1–CUL4A ubiquitin ligase machinery
S Angers, T Li, X Yi, MJ MacCoss, RT Moon, N Zheng
Nature 443 (7111), 590-593, 2006
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
CC Wu, MJ MacCoss, KE Howell, DE Matthews, JR Yates
Analytical chemistry 76 (17), 4951-4959, 2004
Probability-based validation of protein identifications using a modified SEQUEST algorithm
MJ MacCoss, CC Wu, JR Yates
Analytical chemistry 74 (21), 5593-5599, 2002
Wilms tumor suppressor WTX negatively regulates WNT/ß-catenin signaling
MB Major, ND Camp, JD Berndt, XH Yi, SJ Goldenberg, C Hubbert, ...
science 316 (5827), 1043-1046, 2007
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS genetics 6 (2), 2010
The KLHL12–Cullin-3 ubiquitin ligase negatively regulates the Wnt–β-catenin pathway by targeting Dishevelled for degradation
S Angers, CJ Thorpe, TL Biechele, SJ Goldenberg, N Zheng, ...
Nature cell biology 8 (4), 348-357, 2006
Overexpression of catalase targeted to mitochondria attenuates murine cardiac aging
DF Dai, LF Santana, M Vermulst, DM Tomazela, MJ Emond, MJ MacCoss, ...
Circulation 119 (21), 2789, 2009
MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ...
Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004
Using i RT, a normalized retention time for more targeted measurement of peptides
C Escher, L Reiter, B MacLean, R Ossola, F Herzog, J Chilton, ...
Proteomics 12 (8), 1111-1121, 2012
A correlation algorithm for the automated quantitative analysis of shotgun proteomics data
MJ MacCoss, CC Wu, H Liu, R Sadygov, JR Yates
Analytical chemistry 75 (24), 6912-6921, 2003
Shotgun proteomics: tools for the analysis of complex biological systems
CC Wu, MJ MacCoss
Curr Opin Mol Ther 4 (3), 242-250, 2002
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Articles 1–20