| Population genomics and local adaptation in wild isolates of a model microbial eukaryote CE Ellison, C Hall, D Kowbel, J Welch, RB Brem, NL Glass, JW Taylor Proceedings of the National Academy of Sciences 108 (7), 2831-2836, 2011 | 285 | 2011 |
| Dosage compensation via transposable element mediated rewiring of a regulatory network CE Ellison, D Bachtrog Science 342 (6160), 846-850, 2013 | 161 | 2013 |
| Nuclear and genome dynamics in multinucleate ascomycete fungi M Roper, C Ellison, JW Taylor, NL Glass Current biology 21 (18), R786-R793, 2011 | 134 | 2011 |
| Clonal reproduction in fungi JW Taylor, C Hann-Soden, S Branco, I Sylvain, CE Ellison Proceedings of the National Academy of Sciences 112 (29), 8901-8908, 2015 | 123 | 2015 |
| Genetic isolation between two recently diverged populations of a symbiotic fungus S Branco, P Gladieux, CE Ellison, A Kuo, K LaButti, A Lipzen, IV Grigoriev, ... Molecular ecology 24 (11), 2747-2758, 2015 | 116 | 2015 |
| Phylogenetic relationships of Asclepias (Apocynaceae) inferred from non-coding chloroplast DNA sequences M Fishbein, D Chuba, C Ellison, RJ Mason-Gamer, SP Lynch Systematic Botany 36 (4), 1008-1023, 2011 | 110 | 2011 |
| Phylogenetic relationships of Loxosceles and Sicarius spiders are consistent with Western Gondwanan vicariance GJ Binford, MS Callahan, MR Bodner, MR Rynerson, PB Núñez, ... Molecular Phylogenetics and Evolution 49 (2), 538-553, 2008 | 96 | 2008 |
| Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma CE Ellison, JE Stajich, DJ Jacobson, DO Natvig, A Lapidus, B Foster, ... Genetics 189 (1), 55-69, 2011 | 92 | 2011 |
| The Epigenome of Evolving Drosophila Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation Q Zhou, CE Ellison, VB Kaiser, AA Alekseyenko, AA Gorchakov, ... PLoS biology 11 (11), e1001711, 2013 | 88 | 2013 |
| Recombining without Hotspots: A Comprehensive Evolutionary Portrait of Recombination in Two Closely Related Species of Drosophila CS Smukowski Heil, C Ellison, M Dubin, MAF Noor Genome biology and evolution 7 (10), 2829-2842, 2015 | 68 | 2015 |
| Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila AA Alekseyenko, CE Ellison, AA Gorchakov, Q Zhou, VB Kaiser, N Toda, ... Genes & development 27 (8), 853-858, 2013 | 59 | 2013 |
| Continental‐level population differentiation and environmental adaptation in the mushroom Suillus brevipes S Branco, K Bi, HL Liao, P Gladieux, H Badouin, CE Ellison, NH Nguyen, ... Molecular ecology 26 (7), 2063-2076, 2017 | 56 | 2017 |
| Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements CE Ellison, D Bachtrog Elife 4, e05899, 2015 | 41 | 2015 |
| Mushrooms: morphological complexity in the fungi JW Taylor, CE Ellison Proceedings of the National Academy of Sciences 107 (26), 11655-11656, 2010 | 41 | 2010 |
| Recurrent gene co-amplification on Drosophila X and Y chromosomes C Ellison, D Bachtrog PLoS genetics 15 (7), e1008251, 2019 | 40 | 2019 |
| Nanopore sequencing and Hi-C scaffolding provide insight into the evolutionary dynamics of transposable elements and piRNA production in wild strains of Drosophila melanogaster CE Ellison, W Cao Nucleic acids research 48 (1), 290-303, 2020 | 32 | 2020 |
| 3D genome evolution and reorganization in the Drosophila melanogaster species group NS Torosin, A Anand, TR Golla, W Cao, CE Ellison PLoS genetics 16 (12), e1009229, 2020 | 29 | 2020 |
| The nuclear receptor HNF4 drives a brush border gene program conserved across murine intestine, kidney, and embryonic yolk sac L Chen, S Luo, A Dupre, RP Vasoya, A Parthasarathy, R Aita, R Malhotra, ... Nature communications 12 (1), 2886, 2021 | 28 | 2021 |
| Adenine Methylation in Drosophila Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes K Shah, W Cao, CE Ellison G3: Genes, Genomes, Genetics 9 (6), 1893-1900, 2019 | 25 | 2019 |
| Contingency in the convergent evolution of a regulatory network: Dosage compensation in Drosophila C Ellison, D Bachtrog PLoS biology 17 (2), e3000094, 2019 | 24 | 2019 |
