Tyler W. H. Backman
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ChemMine tools: an online service for analyzing and clustering small molecules
TWH Backman, Y Cao, T Girke
Nucleic acids research 39 (suppl_2), W486-W491, 2011
systemPipeR: NGS workflow and report generation environment
TWH Backman, T Girke
BMC Bioinformatics 17, 388, 2016
Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression
Z Zou, TT Saha, S Roy, SW Shin, TWH Backman, T Girke, KP White, ...
Proceedings of the National Academy of Sciences 110 (24), E2173-E2181, 2013
Computational and analytical framework for small RNA profiling by high-throughput sequencing
N Fahlgren, CM Sullivan, KD Kasschau, EJ Chapman, JS Cumbie, ...
Rna 15 (5), 992-1002, 2009
Update of ASRP: the Arabidopsis small RNA project database
TWH Backman, CM Sullivan, JS Cumbie, ZA Miller, EJ Chapman, ...
Nucleic acids research 36 (suppl 1), D982-D985, 2008
fmcsR: mismatch tolerant maximum common substructure searching in R
Y Wang, TWH Backman, K Horan, T Girke
Bioinformatics 29 (21), 2792-2794, 2013
ClusterCAD: a computational platform for type I modular polyketide synthase design
CH Eng, TWH Backman, CB Bailey, C Magnan, H García Martín, L Katz, ...
Nucleic acids research 46 (D1), D509-D515, 2018
The experiment data depot: a web-based software tool for biological experimental data storage, sharing, and visualization
WC Morrell, GW Birkel, M Forrer, T Lopez, TWH Backman, M Dussault, ...
ACS synthetic biology 6 (12), 2248-2259, 2017
Synthetic biology of polyketide synthases
S Yuzawa, TWH Backman, JD Keasling, L Katz
Journal of Industrial Microbiology and Biotechnology 45 (7), 621-633, 2018
Chemoinformatic-guided engineering of polyketide synthases
A Zargar, R Lal, L Valencia, J Wang, TWH Backman, P Cruz-Morales, ...
Journal of the American Chemical Society 142 (22), 9896-9901, 2020
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism
GW Birkel, A Ghosh, VS Kumar, D Weaver, D Ando, TWH Backman, ...
BMC Bioinformatics 18, 205, 2017
Perspectives for self-driving labs in synthetic biology
HG Martin, T Radivojevic, J Zucker, K Bouchard, J Sustarich, S Peisert, ...
Current Opinion in Biotechnology 79, 102881, 2023
bioassayR: Cross-Target Analysis of Small Molecule Bioactivity
TWH Backman, T Girke
Journal of Chemical Information and Modeling 56 (7), 1237-1242, 2016
Multiomics data collection, visualization, and utilization for guiding metabolic engineering
S Roy, T Radivojevic, M Forrer, JM Marti, V Jonnalagadda, T Backman, ...
Frontiers in bioengineering and biotechnology 9, 612893, 2021
Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases
JF Barajas, RP McAndrew, MG Thompson, TWH Backman, B Pang, ...
Journal of Industrial Microbiology and Biotechnology 46 (8), 1225-1235, 2019
ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design
XB Tao, S LaFrance, Y Xing, AA Nava, HG Martin, JD Keasling, ...
Nucleic Acids Research 51 (D1), D532-D538, 2023
Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis
TWH Backman, D Ando, J Singh, JD Keasling, H García Martín
Metabolites 8 (1), 3, 2018
Cheminformatic analysis of high-throughput compound screens
TWH Backman, T Girke
Plant Chemical Genomics: Methods and Protocols, 145-157, 2014
Large-scale bioactivity analysis of the small-molecule assayed proteome
TWH Backman, DS Evans, T Girke
PLoS One 12 (2), e0171413, 2017
BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale
TWH Backman, C Schenk, T Radivojevic, D Ando, J Singh, JJ Czajka, ...
PLOS Computational Biology 19 (11), e1011111, 2023
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