| ChemMine tools: an online service for analyzing and clustering small molecules TWH Backman, Y Cao, T Girke Nucleic acids research 39 (suppl_2), W486-W491, 2011 | 524 | 2011 |
| systemPipeR: NGS workflow and report generation environment TWH Backman, T Girke BMC Bioinformatics 17, 388, 2016 | 213 | 2016 |
| Juvenile hormone and its receptor, methoprene-tolerant, control the dynamics of mosquito gene expression Z Zou, TT Saha, S Roy, SW Shin, TWH Backman, T Girke, KP White, ... Proceedings of the National Academy of Sciences 110 (24), E2173-E2181, 2013 | 155 | 2013 |
| Computational and analytical framework for small RNA profiling by high-throughput sequencing N Fahlgren, CM Sullivan, KD Kasschau, EJ Chapman, JS Cumbie, ... Rna 15 (5), 992-1002, 2009 | 150 | 2009 |
| Update of ASRP: the Arabidopsis small RNA project database TWH Backman, CM Sullivan, JS Cumbie, ZA Miller, EJ Chapman, ... Nucleic acids research 36 (suppl 1), D982-D985, 2008 | 95 | 2008 |
| fmcsR: mismatch tolerant maximum common substructure searching in R Y Wang, TWH Backman, K Horan, T Girke Bioinformatics 29 (21), 2792-2794, 2013 | 79 | 2013 |
| ClusterCAD: a computational platform for type I modular polyketide synthase design CH Eng, TWH Backman, CB Bailey, C Magnan, H García Martín, L Katz, ... Nucleic acids research 46 (D1), D509-D515, 2018 | 72 | 2018 |
| The experiment data depot: a web-based software tool for biological experimental data storage, sharing, and visualization WC Morrell, GW Birkel, M Forrer, T Lopez, TWH Backman, M Dussault, ... ACS synthetic biology 6 (12), 2248-2259, 2017 | 58 | 2017 |
| Perspectives for self-driving labs in synthetic biology HG Martin, T Radivojevic, J Zucker, K Bouchard, J Sustarich, S Peisert, ... Current Opinion in Biotechnology 79, 102881, 2023 | 46 | 2023 |
| Synthetic biology of polyketide synthases S Yuzawa, TWH Backman, JD Keasling, L Katz Journal of Industrial Microbiology and Biotechnology 45 (7), 621-633, 2018 | 36 | 2018 |
| Chemoinformatic-guided engineering of polyketide synthases A Zargar, R Lal, L Valencia, J Wang, TWH Backman, P Cruz-Morales, ... Journal of the American Chemical Society 142 (22), 9896-9901, 2020 | 27 | 2020 |
| The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism GW Birkel, A Ghosh, VS Kumar, D Weaver, D Ando, TWH Backman, ... BMC Bioinformatics 18, 205, 2017 | 21 | 2017 |
| Multiomics data collection, visualization, and utilization for guiding metabolic engineering S Roy, T Radivojevic, M Forrer, JM Marti, V Jonnalagadda, T Backman, ... Frontiers in bioengineering and biotechnology 9, 612893, 2021 | 19 | 2021 |
| ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design XB Tao, S LaFrance, Y Xing, AA Nava, HG Martin, JD Keasling, ... Nucleic Acids Research 51 (D1), D532-D538, 2023 | 14 | 2023 |
| bioassayR: Cross-Target Analysis of Small Molecule Bioactivity TWH Backman, T Girke Journal of Chemical Information and Modeling 56 (7), 1237-1242, 2016 | 14 | 2016 |
| Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases JF Barajas, RP McAndrew, MG Thompson, TWH Backman, B Pang, ... Journal of Industrial Microbiology and Biotechnology 46 (8), 1225-1235, 2019 | 10 | 2019 |
| Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis TWH Backman, D Ando, J Singh, JD Keasling, H García Martín Metabolites 8 (1), 3, 2018 | 6 | 2018 |
| Cheminformatic analysis of high-throughput compound screens TWH Backman, T Girke Plant Chemical Genomics: Methods and Protocols, 145-157, 2014 | 6 | 2014 |
| BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale TWH Backman, C Schenk, T Radivojevic, D Ando, J Singh, JJ Czajka, ... PLOS Computational Biology 19 (11), e1011111, 2023 | 4 | 2023 |
| Large-scale bioactivity analysis of the small-molecule assayed proteome TWH Backman, DS Evans, T Girke PLoS One 12 (2), e0171413, 2017 | 4 | 2017 |
Thomas GirkeProfessor of BioinformaticsVerified email at ucr.edu
