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Casey Bergman
Casey Bergman
Associate Professor, Department of Genetics & Institute of Bioinformatics, University of Georgia
Verified email at uga.edu - Homepage
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
22472007
The Drosophila melanogaster Genetic Reference Panel
TF Mackay, S Richards, EA Stone, A Barbadilla, JF Ayroles, D Zhu, ...
Nature 482, 173-178, 2012
17382012
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337-341, 2009
16512009
Evidence for stabilizing selection in a eukaryotic enhancer element
MZ Ludwig, C Bergman, NH Patel, M Kreitman
Nature 403 (6769), 564-567, 2000
6672000
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
JS Kaminker, CM Bergman, B Kronmiller, J Carlson, R Svirskas, S Patel, ...
Genome biology 3, 1-20, 2002
6452002
Gene expression divergence recapitulates the developmental hourglass model
AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ...
Nature 468 (7325), 811-814, 2010
4672010
Combined evidence annotation of transposable elements in genome sequences
H Quesneville, CM Bergman, O Andrieu, D Autard, D Nouaud, ...
PLoS computational biology 1 (2), e22, 2005
4222005
LINNAEUS: a species name identification system for biomedical literature
M Gerner, G Nenadic, CM Bergman
BMC bioinformatics 11, 1-17, 2010
3812010
ORegAnno: an open-access community-driven resource for regulatory annotation
OL Griffith, SB Montgomery, B Bernier, B Chu, K Kasaian, S Aerts, ...
Nucleic acids research 36 (suppl_1), D107-D113, 2007
3172007
Discovering and detecting transposable elements in genome sequences
CM Bergman, H Quesneville
Briefings in bioinformatics 8 (6), 382-392, 2007
2812007
Functional Evolution of a cis-Regulatory Module
MZ Ludwig, A Palsson, E Alekseeva, CM Bergman, J Nathan, M Kreitman
PLoS biology 3 (4), e93, 2005
2532005
Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster
CM Bergman, JW Carlson, SE Celniker
Bioinformatics 21 (8), 1747-1749, 2005
2272005
Principles of genome evolution in the Drosophila melanogaster species group
JM Ranz, D Maurin, YS Chan, M Von Grotthuss, LDW Hillier, J Roote, ...
PLoS biology 5 (6), e152, 2007
2262007
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
SM Gallo, DT Gerrard, D Miner, M Simich, B Des Soye, CM Bergman, ...
Nucleic acids research 39 (suppl_1), D118-D123, 2010
2192010
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
CM Bergman, H Quesneville, D Anxolabéhère, M Ashburner
Genome biology 7, 1-21, 2006
2142006
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster
MF Richardson, LA Weinert, JJ Welch, RS Linheiro, MM Magwire, ...
PLoS Genet 8 (12), e1003129, 2012
2082012
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
CM Bergman, M Kreitman
Genome Research 11 (8), 1335-1345, 2001
2072001
Drosophila innate immunity: regional and functional specialization of prophenoloxidases
JP Dudzic, S Kondo, R Ueda, CM Bergman, B Lemaitre
BMC biology 13, 1-16, 2015
1912015
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, ...
Genome Biology 3 (12), 1-0086.20, 2002
1702002
Benchmarking tools for the alignment of functional noncoding DNA
DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
BMC bioinformatics 5, 1-17, 2004
1692004
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Articles 1–20