| Understanding mechanisms underlying human gene expression variation with RNA sequencing JK Pickrell, JC Marioni, AA Pai, JF Degner, BE Engelhardt, E Nkadori, ... Nature 464 (7289), 768-772, 2010 | 1482 | 2010 |
| DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines JT Bell, AA Pai, JK Pickrell, DJ Gaffney, R Pique-Regi, JF Degner, Y Gilad, ... Genome biology 12 (1), R10, 2011 | 963 | 2011 |
| NOTCH2 mutations cause Alagille syndrome, a heterogeneous disorder of the notch signaling pathway R McDaniell, DM Warthen, PA Sanchez-Lara, A Pai, ID Krantz, DA Piccoli, ... The American Journal of Human Genetics 79 (1), 169-173, 2006 | 771 | 2006 |
| DNase I sensitivity QTLs are a major determinant of human expression variation JF Degner, AA Pai, R Pique-Regi, JB Veyrieras, DJ Gaffney, JK Pickrell, ... Nature 482 (7385), 390-394, 2012 | 757 | 2012 |
| Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data R Pique-Regi, JF Degner, AA Pai, DJ Gaffney, Y Gilad, JK Pritchard Genome research 21 (3), 447-455, 2011 | 634 | 2011 |
| Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data JF Degner, JC Marioni, AA Pai, JK Pickrell, E Nkadori, Y Gilad, ... Bioinformatics 25 (24), 3207, 2009 | 602 | 2009 |
| RNA-seq: impact of RNA degradation on transcript quantification I Gallego Romero, AA Pai, J Tung, Y Gilad BMC biology 12 (1), 1-13, 2014 | 417 | 2014 |
| Noisy splicing drives mRNA isoform diversity in human cells JK Pickrell, AA Pai, Y Gilad, JK Pritchard PLoS genetics 6 (12), e1001236, 2010 | 316 | 2010 |
| Controls of nucleosome positioning in the human genome DJ Gaffney, G McVicker, AA Pai, YN Fondufe-Mittendorf, N Lewellen, ... PLoS genetics 8 (11), e1003036, 2012 | 291 | 2012 |
| Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection LB Barreiro, L Tailleux, AA Pai, B Gicquel, JC Marioni, Y Gilad Proceedings of the National Academy of Sciences 109 (4), 1204-1209, 2012 | 273 | 2012 |
| Dissecting the regulatory architecture of gene expression QTLs DJ Gaffney, JB Veyrieras, JF Degner, R Pique-Regi, AA Pai, GE Crawford, ... Genome biology 13, 1-15, 2012 | 234 | 2012 |
| A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues AA Pai, JT Bell, JC Marioni, JK Pritchard, Y Gilad PLoS genetics 7 (2), e1001316, 2011 | 218 | 2011 |
| Bacterial infection remodels the DNA methylation landscape of human dendritic cells A Pacis, L Tailleux, AM Morin, J Lambourne, JL MacIsaac, V Yotova, ... Genome research 25 (12), 1801-1811, 2015 | 211 | 2015 |
| The genetic and mechanistic basis for variation in gene regulation AA Pai, JK Pritchard, Y Gilad PLoS genetics 11 (1), e1004857, 2015 | 183 | 2015 |
| The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels AA Pai, CE Cain, O Mizrahi-Man, S De Leon, N Lewellen, JB Veyrieras, ... Public Library of Science 8 (10), e1003000, 2012 | 114 | 2012 |
| A divalent siRNA chemical scaffold for potent and sustained modulation of gene expression throughout the central nervous system JF Alterman, BMDC Godinho, MR Hassler, CM Ferguson, D Echeverria, ... Nature biotechnology 37 (8), 884-894, 2019 | 103 | 2019 |
| Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection AA Pai, G Baharian, A Pagé Sabourin, JF Brinkworth, Y Nédélec, ... PLoS genetics 12 (9), e1006338, 2016 | 85 | 2016 |
| The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture AA Pai, T Henriques, K McCue, A Burkholder, K Adelman, CB Burge Elife 6, e32537, 2017 | 81 | 2017 |
| Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters Y Chen, AA Pai, J Herudek, M Lubas, N Meola, AI Järvelin, R Andersson, ... Nature genetics 48 (9), 984-994, 2016 | 69 | 2016 |
| Dissecting the within-Africa ancestry of populations of African descent in the Americas K Stefflova, MC Dulik, JS Barnholtz-Sloan, AA Pai, AH Walker, ... Plos one 6 (1), e14495, 2011 | 66 | 2011 |
Yoav GiladUniversity of ChicagoVerified email at uchicago.edu
