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Michael J Sweredoski
Michael J Sweredoski
Molecular Genetics Pathology Laboratory at KP
Verified email at kp.org
Title
Cited by
Cited by
Year
SCRATCH: a protein structure and structural feature prediction server
J Cheng, AZ Randall, MJ Sweredoski, P Baldi
Nucleic acids research 33 (suppl_2), W72-W76, 2005
11382005
The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3
CA McHugh, CK Chen, A Chow, CF Surka, C Tran, P McDonel, ...
Nature 521 (7551), 232-236, 2015
10902015
Broad activation of the ubiquitin–proteasome system by Parkin is critical for mitophagy
NC Chan, AM Salazar, AH Pham, MJ Sweredoski, NJ Kolawa, ...
Human molecular genetics 20 (9), 1726-1737, 2011
10462011
Human gut microbiota from autism spectrum disorder promote behavioral symptoms in mice
G Sharon, NJ Cruz, DW Kang, MJ Gandal, B Wang, YM Kim, EM Zink, ...
Cell 177 (6), 1600-1618. e17, 2019
8722019
Cand1 promotes assembly of new SCF complexes through dynamic exchange of F box proteins
NW Pierce, JE Lee, X Liu, MJ Sweredoski, RLJ Graham, EA Larimore, ...
Cell 153 (1), 206-215, 2013
2922013
Accurate prediction of protein disordered regions by mining protein structure data
J Cheng, MJ Sweredoski, P Baldi
Data mining and knowledge discovery 11, 213-222, 2005
2662005
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
MJ Sweredoski, P Baldi
Bioinformatics 24 (12), 1459-1460, 2008
2632008
COBEpro: a novel system for predicting continuous B-cell epitopes
MJ Sweredoski, P Baldi
Protein Engineering, Design & Selection 22 (3), 113-120, 2009
2342009
Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers
A Kalli, GT Smith, MJ Sweredoski, S Hess
Journal of proteome research 12 (7), 3071-3086, 2013
2132013
The top‐down, middle‐down, and bottom‐up mass spectrometry approaches for characterization of histone variants and their post‐translational modifications
A Moradian, A Kalli, MJ Sweredoski, S Hess
Proteomics 14 (4-5), 489-497, 2014
1882014
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
MK Sung, TR Porras-Yakushi, JM Reitsma, FM Huber, MJ Sweredoski, ...
Elife 5, e19105, 2016
1662016
Glutamine triggers acetylation-dependent degradation of glutamine synthetase via the thalidomide receptor cereblon
T Van Nguyen, JE Lee, MJ Sweredoski, SJ Yang, SJ Jeon, JS Harrison, ...
Molecular cell 61 (6), 809-820, 2016
1582016
Composition and regulation of the cellular repertoire of SCF ubiquitin ligases
JM Reitsma, X Liu, KM Reichermeier, A Moradian, MJ Sweredoski, ...
Cell 171 (6), 1326-1339. e14, 2017
1302017
DOMpro: protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks
J Cheng, MJ Sweredoski, P Baldi
Data mining and knowledge discovery 13, 1-10, 2006
1292006
Ribosomal proteins produced in excess are degraded by the ubiquitin–proteasome system
MK Sung, JM Reitsma, MJ Sweredoski, S Hess, RJ Deshaies
Molecular biology of the cell 27 (17), 2642-2652, 2016
1232016
TMBpro: secondary structure, β-contact and tertiary structure prediction of transmembrane β-barrel proteins
A Randall, J Cheng, M Sweredoski, P Baldi
Bioinformatics 24 (4), 513-520, 2008
972008
Quantitative, time-resolved proteomic analysis by combining bioorthogonal noncanonical amino acid tagging and pulsed stable isotope labeling by amino acids in cell culture
JD Bagert, YJ Xie, MJ Sweredoski, Y Qi, S Hess, EM Schuman, DA Tirrell
Molecular & Cellular Proteomics 13 (5), 1352-1358, 2014
962014
Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle
R Mosadeghi, KM Reichermeier, M Winkler, A Schreiber, JM Reitsma, ...
Elife 5, e12102, 2016
952016
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
NM Belliveau, SL Barnes, WT Ireland, DL Jones, MJ Sweredoski, ...
Proceedings of the National Academy of Sciences 115 (21), E4796-E4805, 2018
932018
Cell-specific proteomic analysis in Caenorhabditis elegans
KP Yuet, MK Doma, JT Ngo, MJ Sweredoski, RLJ Graham, A Moradian, ...
Proceedings of the National Academy of Sciences 112 (9), 2705-2710, 2015
912015
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