Eric P Nawrocki
Eric P Nawrocki
National Center for Biotechnology Information (NCBI), NLM, NIH
Verified email at
Cited by
Cited by
NCBI prokaryotic genome annotation pipeline
T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ...
Nucleic acids research 44 (14), 6614-6624, 2016
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610-618, 2012
Infernal 1.1: 100-fold faster RNA homology searches
EP Nawrocki, SR Eddy
Bioinformatics 29 (22), 2933-2935, 2013
Infernal 1.0: inference of RNA alignments
EP Nawrocki, DL Kolbe, SR Eddy
Bioinformatics 25 (10), 1335-1337, 2009
Rfam 12.0: updates to the RNA families database
EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ...
Nucleic acids research 43 (D1), D130-D137, 2015
Rfam: updates to the RNA families database
PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ...
Nucleic acids research 37 (suppl_1), D136-D140, 2009
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
Rfam 11.0: 10 years of RNA families
SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ...
Nucleic acids research 41 (D1), D226-D232, 2013
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ...
Nucleic Acids Research 49 (D1), D192-D200, 2021
Rfam: Wikipedia, clans and the “decimal” release
PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ...
Nucleic acids research 39 (suppl_1), D141-D145, 2010
Virus Variation Resource–improved response to emergent viral outbreaks
EL Hatcher, SA Zhdanov, Y Bao, O Blinkova, EP Nawrocki, Y Ostapchuck, ...
Nucleic acids research 45 (D1), D482-D490, 2017
Query-dependent banding (QDB) for faster RNA similarity searches
EP Nawrocki, SR Eddy
PLoS computational biology 3 (3), e56, 2007
Non‐coding RNA analysis using the Rfam database
I Kalvari, EP Nawrocki, J Argasinska, N Quinones‐Olvera, RD Finn, ...
Current protocols in bioinformatics 62 (1), e51, 2018
Structural RNA homology search and alignment using covariance models
EP Nawrocki
Washington University in St. Louis, 2009
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic Acids Research 47 (D1), D221-D229, 2019
Integrating membrane transport with male gametophyte development and function through transcriptomics
KW Bock, D Honys, JM Ward, S Padmanaban, EP Nawrocki, KD Hirschi, ...
Plant Physiology 140 (4), 1151-1168, 2006
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
Nucleic acids research 49 (D1), D212-D220, 2021
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ...
Briefings in bioinformatics 22 (2), 642-663, 2021
RNIE: genome-wide prediction of bacterial intrinsic terminators
PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg
Nucleic acids research 39 (14), 5845-5852, 2011
Annotating functional RNAs in genomes using Infernal
EP Nawrocki
RNA sequence, structure, and function: computational and bioinformatic …, 2014
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