M. Oguzhan Külekci

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Simone FaroAssociate Professor of Computer Science, University of CataniaVerified email at dmi.unict.it
Bojian XuProfessor of Computer Science, Eastern Washington UniversityVerified email at ewu.edu
Jeffrey S. VitterDistinguished Professor Emeritus of Computer & Information Science and Chancellor of the Univ. ofVerified email at OleMiss.edu
Sharma V. ThankachanNorth Carolina State UniversityVerified email at ncsu.edu
Domenico CantoneProfessor of Computer Science, University of CataniaVerified email at dmi.unict.it
Jorma TarhioProfessor Emeritus, Aalto UniversityVerified email at aalto.fi
Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
Tamanna ChhabraProfessorVerified email at sheridancollege.ca
Kemal OflazerCarnegie Mellon University in QatarVerified email at cs.cmu.edu
Paniz AbedinFlorida Polytechnic UniversityVerified email at floridapoly.edu
Sahar HooshmandCalifornia State University Dominguez HillsVerified email at csudh.edu
Mahmut Samil SagirogluCTO, ErlabVerified email at erlab.com.tr
David WoodruffProfessor of Computer Science, Carnegie Mellon UniversityVerified email at cs.cmu.edu
Nikolai KarpovIndiana UniversityVerified email at iu.edu
Can KockanComputational Scientist, Broad InstituteVerified email at broadinstitute.org
Natnatee DokmaiPhD Student, Indiana University Bloomington, Broad Institute of MIT and HarvardVerified email at iu.edu
Kaiyuan ZhuUC San DiegoVerified email at eng.ucsd.edu
Ali FotouhiResearch Assistant at Université de SherbrookeVerified email at usherbrooke.ca
Mehmed OzkanBogazici UniversityVerified email at boun.edu.tr
Wing-Kai Hon (韓永楷)Professor of Computer Science, National Tsing Hua University, TaiwanVerified email at cs.nthu.edu.tw

M. Oguzhan Külekci

Dept. of Computer Science, Indiana University Bloomington and Istanbul Technical University

Verified email at acm.org - Homepage

algorithms bioinformatics data compression pattern matching compressed data structures


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Sketching algorithms for genomic data analysis and querying in a secure enclave C Kockan, K Zhu, N Dokmai, N Karpov, MO Kulekci, DP Woodruff, ... Nature methods 17 (3), 295-301, 2020	41	2020
Filter Based Fast Matching of Long Patterns by Using SIMD Instructions. MO Külekci Stringology, 118-128, 2009	41	2009
Fast packed string matching for short patterns S Faro, MO Külekci 2013 Proceedings of the Fifteenth Workshop on Algorithm Engineering and …, 2013	33	2013
Fast multiple string matching using streaming SIMD extensions technology S Faro, MO Külekci String Processing and Information Retrieval: 19th International Symposium …, 2012	30	2012
Efficient maximal repeat finding using the burrows-wheeler transform and wavelet tree MO Kulekci, JS Vitter, B Xu IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (2), 421-429, 2011	30	2011
Efficient algorithms for the order preserving pattern matching problem S Faro, MO Külekci Algorithmic Aspects in Information and Management: 11th International …, 2016	28	2016
Alternative Algorithms for Order-Preserving Matching. T Chhabra, MO Külekci, J Tarhio Stringology, 36-46, 2015	26	2015
Shortest Unique Substring Query Revisited BX Atalay Mert İleri, M. Oğuzhan Külekci Combinatorial Pattern Matching, Lecture Notes in Computer Science 8486, 172-181, 2014	24*	2014
A method to overcome computer word size limitation in bit-parallel pattern matching MO Külekci Algorithms and Computation: 19th International Symposium, ISAAC 2008, Gold …, 2008	24	2008
Enhanced variable-length codes: Improved compression with efficient random access MO Külekci 2014 Data Compression Conference, 362-371, 2014	23	2014
Fast and flexible packed string matching S Faro, MO Külekci Journal of Discrete Algorithms 28, 61-72, 2014	20	2014
Engineering order‐preserving pattern matching with SIMD parallelism T Chhabra, S Faro, MO Külekci, J Tarhio Software: Practice and Experience 47 (5), 731-739, 2017	19	2017
An Efficient Skip-Search Approach to the Order-Preserving Pattern Matching Problem. D Cantone, S Faro, MO Külekci Stringology, 22-35, 2015	19	2015
A simple yet time-optimal and linear-space algorithm for shortest unique substring queries AM Ileri, MO Külekci, B Xu Theoretical Computer Science 562, 621-633, 2015	16	2015
BLIM: A new bit-parallel pattern matching algorithm overcoming computer word size limitation MO Külekci Mathematics in Computer Science 3 (4), 407, 2010	15	2010
Tara: An algorithm for fast searching of multiple patterns on text files MO Kulekci 2007 22nd international symposium on computer and information sciences, 1-6, 2007	15	2007
On scrambling the burrows–wheeler transform to provide privacy in lossless compression MO Külekci Computers & Security 31 (1), 26-32, 2012	12	2012
Turkish word segmentation using morphological analyzer. MO Külekci, M Özkan INTERSPEECH, 1053-1056, 2001	11	2001
An infrastructure for Turkish prosody generation in text-to-speech synthesis MO Külekçi, K Oflazer	9	2006
Nucleotide sequence alignment and compression via shortest unique substring B Adaş, E Bayraktar, S Faro, IE Moustafa, MO Külekçi 3rd International Work-Conference on Bioinformatics and Biomedical Engineering, 2015	7	2015

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