Amy Schmid
Amy Schmid
Duke University Biology Department, Assistant Professor
Verified email at - Homepage
Cited by
Cited by
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
Clustering gene expression time series data using an infinite Gaussian process mixture model
IC McDowell, D Manandhar, CM Vockley, AK Schmid, TE Reddy, ...
PLoS computational biology 14 (1), e1005896, 2018
Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1
H Rothfuss, JC Lara, AK Schmid, ME Lidstrom
Microbiology 152 (9), 2779-2787, 2006
Archaeal cells share common size control with bacteria despite noisier growth and division
YJ Eun, PY Ho, M Kim, S LaRussa, L Robert, LD Renner, A Schmid, ...
Nature microbiology 3 (2), 148-154, 2018
Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli
AJ Kulp, B Sun, T Ai, AJ Manning, N Orench-Rivera, AK Schmid, ...
PloS one 10 (9), e0139200, 2015
The anatomy of microbial cell state transitions in response to oxygen
AK Schmid, DJ Reiss, A Kaur, M Pan, N King, PT Van, L Hohmann, ...
Genome research 17 (10), 1399-1413, 2007
A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability
AK Schmid, DJ Reiss, M Pan, T Koide, NS Baliga
Molecular systems biology 5 (1), 282, 2009
The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon
K Sharma, N Gillum, JL Boyd, A Schmid
BMC genomics 13 (1), 1-18, 2012
Detecting differential growth of microbial populations with Gaussian process regression
PD Tonner, CL Darnell, BE Engelhardt, AK Schmid
Genome research 27 (2), 320-333, 2017
Halobacterium salinarum NRC-1 peptideAtlas: Toward strategies for targeted proteomics and improved proteome coverage
T Van Phu, AK Schmid, NL King, A Kaur, M Pan, K Whitehead, T Koide, ...
Journal of Proteome Research 7 (9), 3755-3764, 2008
Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage
PT Van, AK Schmid, NL King, A Kaur, M Pan, K Whitehead, T Koide, ...
Journal of proteome research 7 (9), 3755-3764, 2008
Synergistic impacts of organic acids and pH on growth of Pseudomonas aeruginosa: A comparison of parametric and Bayesian non-parametric methods to model growth
FML Bushell, PD Tonner, S Jabbari, AK Schmid, PA Lund
Frontiers in Microbiology 9, 3196, 2019
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
JC Bare, PT Shannon, AK Schmid, NS Baliga
BMC bioinformatics 8 (1), 1-12, 2007
Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon
AK Schmid, M Pan, K Sharma, NS Baliga
Nucleic acids research 39 (7), 2519-2533, 2011
A Regulatory Hierarchy Controls the Dynamic Transcriptional Response to Extreme Oxidative Stress in Archaea
PD Tonner, AMC Pittman, JG Gulli, K Sharma, AK Schmid
PLoS genetics 11 (1), e1004912, 2015
Transcriptional regulation in archaea: from individual genes to global regulatory networks
M Martinez-Pastor, PD Tonner, CL Darnell, AK Schmid
Annual review of genetics 51 (1), 2017
Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans
AK Schmid, HA Howell, JR Battista, SN Peterson, ME Lidstrom
Journal of bacteriology 187 (10), 3339-3351, 2005
A transcription factor links growth rate and metabolism in the hypersaline adapted archaeon Halobacterium salinarum
H Todor, K Dulmage, N Gillum, JR Bain, MJ Muehlbauer, AK Schmid
Molecular microbiology 93 (6), 1172-1182, 2014
Global Whole-Cell FTICR Mass Spectrometric Proteomics Analysis of the Heat Shock Response in the Radioresistant Bacterium Deinococcus r adiodurans
AK Schmid, MS Lipton, H Mottaz, ME Monroe, RD Smith, ME Lidstrom
Journal of proteome research 4 (3), 709-718, 2005
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