| A predictive model for transcriptional control of physiology in a free living cell R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ... Cell 131 (7), 1354-1365, 2007 | 336 | 2007 |
| Prevalence of transcription promoters within archaeal operons and coding sequences T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ... Molecular systems biology 5 (1), 285, 2009 | 149 | 2009 |
| Clustering gene expression time series data using an infinite Gaussian process mixture model IC McDowell, D Manandhar, CM Vockley, AK Schmid, TE Reddy, ... PLoS computational biology 14 (1), e1005896, 2018 | 109 | 2018 |
| Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1 H Rothfuss, JC Lara, AK Schmid, ME Lidstrom Microbiology 152 (9), 2779-2787, 2006 | 74 | 2006 |
| Archaeal cells share common size control with bacteria despite noisier growth and division YJ Eun, PY Ho, M Kim, S LaRussa, L Robert, LD Renner, A Schmid, ... Nature microbiology 3 (2), 148-154, 2018 | 73 | 2018 |
| Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli AJ Kulp, B Sun, T Ai, AJ Manning, N Orench-Rivera, AK Schmid, ... PloS one 10 (9), e0139200, 2015 | 73 | 2015 |
| The anatomy of microbial cell state transitions in response to oxygen AK Schmid, DJ Reiss, A Kaur, M Pan, N King, PT Van, L Hohmann, ... Genome research 17 (10), 1399-1413, 2007 | 68 | 2007 |
| A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability AK Schmid, DJ Reiss, M Pan, T Koide, NS Baliga Molecular systems biology 5 (1), 282, 2009 | 65 | 2009 |
| The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon K Sharma, N Gillum, JL Boyd, A Schmid BMC genomics 13 (1), 1-18, 2012 | 52 | 2012 |
| Detecting differential growth of microbial populations with Gaussian process regression PD Tonner, CL Darnell, BE Engelhardt, AK Schmid Genome research 27 (2), 320-333, 2017 | 49 | 2017 |
| Halobacterium salinarum NRC-1 peptideAtlas: Toward strategies for targeted proteomics and improved proteome coverage T Van Phu, AK Schmid, NL King, A Kaur, M Pan, K Whitehead, T Koide, ... Journal of Proteome Research 7 (9), 3755-3764, 2008 | 47 | 2008 |
| Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage PT Van, AK Schmid, NL King, A Kaur, M Pan, K Whitehead, T Koide, ... Journal of proteome research 7 (9), 3755-3764, 2008 | 47 | 2008 |
| Synergistic impacts of organic acids and pH on growth of Pseudomonas aeruginosa: A comparison of parametric and Bayesian non-parametric methods to model growth FML Bushell, PD Tonner, S Jabbari, AK Schmid, PA Lund Frontiers in Microbiology 9, 3196, 2019 | 43 | 2019 |
| The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications JC Bare, PT Shannon, AK Schmid, NS Baliga BMC bioinformatics 8 (1), 1-12, 2007 | 43 | 2007 |
| Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon AK Schmid, M Pan, K Sharma, NS Baliga Nucleic acids research 39 (7), 2519-2533, 2011 | 37 | 2011 |
| A Regulatory Hierarchy Controls the Dynamic Transcriptional Response to Extreme Oxidative Stress in Archaea PD Tonner, AMC Pittman, JG Gulli, K Sharma, AK Schmid PLoS genetics 11 (1), e1004912, 2015 | 34 | 2015 |
| Transcriptional regulation in archaea: from individual genes to global regulatory networks M Martinez-Pastor, PD Tonner, CL Darnell, AK Schmid Annual review of genetics 51 (1), 2017 | 33 | 2017 |
| Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans AK Schmid, HA Howell, JR Battista, SN Peterson, ME Lidstrom Journal of bacteriology 187 (10), 3339-3351, 2005 | 33 | 2005 |
| A transcription factor links growth rate and metabolism in the hypersaline adapted archaeon Halobacterium salinarum H Todor, K Dulmage, N Gillum, JR Bain, MJ Muehlbauer, AK Schmid Molecular microbiology 93 (6), 1172-1182, 2014 | 32 | 2014 |
| Global Whole-Cell FTICR Mass Spectrometric Proteomics Analysis of the Heat Shock Response in the Radioresistant Bacterium Deinococcus r adiodurans AK Schmid, MS Lipton, H Mottaz, ME Monroe, RD Smith, ME Lidstrom Journal of proteome research 4 (3), 709-718, 2005 | 32 | 2005 |
