Tomislav Šmuc

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Fran SupekGenome Data Science lab PI, BRIC / University of Copenhagen professor, IRB Barcelona Group LeaderVerified email at irb.hr
Matko BošnjakGoogle DeepMindVerified email at deepmind.com
Nino Antulov-FantulinHead of Research @ Aisot Technologies, Privatdozent at ETH ZurichVerified email at ethz.ch
Saso DzeroskiJozef Stefan Institute, Dept. of Knowledge TechnologiesVerified email at ijs.si
Krešimir TrontlFull professor, University of Zagreb Faculty of Electrical Engineering and ComputingVerified email at fer.unizg.hr
Anita KriskoUniversity Medical Center Goettingen, Department of Experimental NeurodegenerationVerified email at med.uni-goettingen.de
Nada LavracJozef Stefan InstituteVerified email at ijs.si
Marko MarjanovicRudjer Boskovic InstituteVerified email at irb.hr
Jurica LevaticPostdoc, Department of Knowledge Technologies, Jožef Stefan Institute, Ljubljana, SloveniaVerified email at ijs.si
Natalija Topic PopovicIRBVerified email at irb.hr
Miljenko ŠimpragaProfesor, Veterinarski fakultet, Sveučilište u ZagrebuVerified email at vef.hr
Panče PanovJožef Stefan InstituteVerified email at ijs.si
Aleksandar VojtaUniversity of Zagreb, Faculty of Science, Department of BiologyVerified email at biol.pmf.hr
Kristian VlahovicekUniversity of Zagreb - Faculty of Science - Department of Biology - Bioinformatics GroupVerified email at biol.pmf.hr
Jelena ReparResearch associate at Ruder Boskovic Institute, CroatiaVerified email at irb.hr
Leo FrkanecRuđer Bošković InstituteVerified email at irb.hr
Goran KragolSelvitaVerified email at selvita.com
Maja BuljubašićUniversity Hospital Center Split (KBC Split)Verified email at kbsplit.hr
Ivo F. SbalzariniTU Dresden & Max Planck Institute of Molecular Cell Biology and GeneticsVerified email at mpi-cbg.de
Nela NikolicUniversity of SouthamptonVerified email at soton.ac.uk

Tomislav Šmuc

Senior scientist, Rudjer Boskovic Institute, Zagreb, Croatia

Verified email at irb.hr - Homepage

data mining machine learning computational biology evolutionary optimization


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REVIGO summarizes and visualizes long lists of gene ontology terms F Supek, M Bošnjak, N Škunca, T Šmuc PloS one 6 (7), e21800, 2011	6114	2011
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	1094	2013
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019	387	2019
Identification of patient zero in static and temporal networks: Robustness and limitations N Antulov-Fantulin, A Lančić, T Šmuc, H Štefančić, M Šikić Physical review letters 114 (24), 248701, 2015	124	2015
The landscape of microbial phenotypic traits and associated genes M Brbić, M Piškorec, V Vidulin, A Kriško, T Šmuc, F Supek Nucleic acids research, gkw964, 2016	112	2016
Translational selection is ubiquitous in prokaryotes F Supek, N Škunca, J Repar, K Vlahoviček, T Šmuc PLoS genetics 6 (6), e1001004, 2010	92	2010
On Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli F Supek, T \# 352; muc Genetics 185 (3), 1129-1134, 2010	90	2010
Antitumor potential of crown ethers: structure− activity relationships, cell cycle disturbances, and cell death studies of a series of ionophores M Marjanović, M Kralj, F Supek, L Frkanec, I Piantanida, T Šmuc, ... Journal of medicinal chemistry 50 (5), 1007-1018, 2007	78	2007
Crowdsourced mapping of unexplored target space of kinase inhibitors RJ Cichońska, A., Ravikumar, B., Allaway Nature Communications 12 (3307), 2021	69	2021
Support vector regression model for the estimation of γ-ray buildup factors for multi-layer shields K Trontl, T Šmuc, D Pevec Annals of Nuclear Energy 34 (12), 939-952, 2007	64	2007
Accurate models for P-gp drug recognition induced from a cancer cell line cytotoxicity screen J Levatic, J Curak, M Kralj, T Smuc, M Osmak, F Supek Journal of medicinal chemistry 56 (14), 5691-5708, 2013	63	2013
Innovative methods in assessing political risk for business internationalization R Rios-Morales, D Gamberger, T Šmuc, F Azuaje Research in International Business and Finance 23 (2), 144-156, 2009	58	2009
Codon evolution: mechanisms and models GM Cannarozzi, A Schneider Oxford University Press, 2012	57	2012
Annealing strategies for loading pattern optimization T Šmuc, D Pevec, B Petrović Annals of nuclear energy 21 (6), 325-336, 1994	56	1994
Cohesiveness in financial news and its relation to market volatility M Piškorec, N Antulov-Fantulin, PK Novak, I Mozetič, M Grčar, I Vodenska, ... Scientific reports 4 (1), 5038, 2014	54	2014
Reference intervals for organically raised sheep: Effects of breed, location and season on hematological and biochemical parameters M Šimpraga, T Šmuc, K Matanović, L Radin, A Shek-Vugrovečki, I Ljubičić, ... Small ruminant research 112 (1-3), 1-6, 2013	53	2013
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships N Škunca, M Bošnjak, A Kriško, P Panov, S Džeroski, T Šmuc, F Supek PLoS computational biology 9 (1), e1002852, 2013	50	2013
Novel methods for assessing fish blood biochemical data R Coz‐Rakovac, T Smuc, N Topic Popovic, I Strunjak‐Perovic, ... Journal of applied ichthyology 24 (1), 77-80, 2008	49	2008
Could LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns F Supek, TŠ Ramljak, M Marjanović, M Buljubašić, G Kragol, N Ilić, ... European journal of medicinal chemistry 46 (8), 3444-3454, 2011	43	2011
Non-linear analysis of heart rate variability in patients with coronary heart disease G Krstacic, A Krstacic, M Martinis, E Vargovic, A Knezevic, A Smalcelj, ... Computers in cardiology, 673-675, 2002	41	2002

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