Manolis Kellis
Manolis Kellis
Professor of Computer Science, MIT and Broad Institute
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
125132012
The genotype-tissue expression (GTEx) project
J Lonsdale, J Thomas, M Salvatore, R Phillips, E Lo, S Shad, R Hasz, ...
Nature genetics 45 (6), 580-585, 2013
45422013
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
42822015
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
42242012
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223-227, 2009
40902009
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
GTEx Consortium, KG Ardlie, DS Deluca, AV Segrč, TJ Sullivan, ...
Science 348 (6235), 648-660, 2015
32412015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
28322011
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ...
Nature 438 (7069), 803-819, 2005
26012005
Transcriptional regulatory code of a eukaryotic genome
CT Harbison, DB Gordon, TI Lee, NJ Rinaldi, KD Macisaac, TW Danford, ...
Nature 431 (7004), 99-104, 2004
25342004
Histone modifications at human enhancers reflect global cell-type-specific gene expression
ND Heintzman, GC Hon, RD Hawkins, P Kheradpour, A Stark, LF Harp, ...
Nature 459 (7243), 108-112, 2009
24022009
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
J Brennecke, AA Aravin, A Stark, M Dus, M Kellis, R Sachidanandam, ...
Cell 128 (6), 1089-1103, 2007
22992007
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
X Xie, J Lu, EJ Kulbokas, TR Golub, V Mootha, K Lindblad-Toh, ...
Nature 434 (7031), 338-345, 2005
22502005
Sequencing and comparison of yeast species to identify genes and regulatory elements
M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
Nature 423 (6937), 241-254, 2003
21172003
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-218, 2007
20432007
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O Jaillon, JM Aury, F Brunet, JL Petit, N Stange-Thomann, E Mauceli, ...
Nature 431 (7011), 946-957, 2004
19802004
HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
LD Ward, M Kellis
Nucleic acids research 40 (D1), D930-D934, 2012
19772012
The genome sequence of the filamentous fungus Neurospora crassa
JE Galagan, SE Calvo, KA Borkovich, EU Selker, ND Read, D Jaffe, ...
Nature 422 (6934), 859-868, 2003
18132003
ChromHMM: automating chromatin-state discovery and characterization
J Ernst, M Kellis
Nature methods 9 (3), 215-216, 2012
18052012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
17112012
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
M Kellis, BW Birren, ES Lander
Nature 428 (6983), 617-624, 2004
17002004
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