Susannah Tringe

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Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Jeff DanglProfessor--HHMI and Dept of Biology; UNC-Chapel HillVerified email at email.unc.edu
Jillian BANFIELDUniversity of California BerkeleyVerified email at berkeley.edu
Julien TremblayStaff scientist, National Research Council CanadaVerified email at nrc-cnrc.gc.ca
Brian C. ThomasCEO/Founder, Metagenomi.coVerified email at metagenomi.co
Derek Severi LundbergSwedish University of Agricultural Sciences (SLU)Verified email at slu.se
Shaomei HeUniversity of Wisconsin-MadisonVerified email at wisc.edu
Matthias HessUC DavisVerified email at ucdavis.edu
Kenneth H. WilliamsLawrence Berkeley National LaboratoryVerified email at lbl.gov
Axel ViselLawrence Berkeley National LaboratoryVerified email at lbl.gov
Ruth E. LeyDepartment of Microbiome Science, Max Planck Institute for Developmental Biology, TübingenVerified email at tuebingen.mpg.de
Laura HugAssistant Professor, University of Waterloo Department of BiologyVerified email at uwaterloo.ca
Asaf SalamovJoint Genome InstituteVerified email at lbl.gov
Kyle R. FrischkornSenior Editor, Nature MicrobiologyVerified email at us.nature.com
Boran KartalGroup Leader, Microbial Physiology Group, Max Planck Institute for Marine MicrobiologyVerified email at mpi-bremen.de
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Alex CopelandJoint Genome InstituteVerified email at lbl.gov
Kelly C. WrightonColorado State UniversityVerified email at colostate.edu
prof dr ir Mike S.M. JettenRadboud University, Microbiology, Nijmegen, NetherlandsVerified email at science.ru.nl

Susannah Tringe

Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory

Verified email at lbl.gov - Homepage

Metagenomics bioinformatics genomics


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Defining the core Arabidopsis thaliana root microbiome DS Lundberg, SL Lebeis, SH Paredes, S Yourstone, J Gehring, S Malfatti, ... Nature 488 (7409), 86-90, 2012	2279	2012
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	1932	2005
Comparative metagenomics of microbial communities SG Tringe, C Von Mering, A Kobayashi, AA Salamov, K Chen, HW Chang, ... Science 308 (5721), 554-557, 2005	1932	2005
Diversity and heritability of the maize rhizosphere microbiome under field conditions JA Peiffer, A Spor, O Koren, Z Jin, SG Tringe, JL Dangl, ES Buckler, ... Proceedings of the National Academy of Sciences 110 (16), 6548-6553, 2013	1475	2013
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ... Nature 450 (7169), 560-565, 2007	1440	2007
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen M Hess, A Sczyrba, R Egan, TW Kim, H Chokhawala, G Schroth, S Luo, ... Science 331 (6016), 463-467, 2011	1339	2011
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017	1037	2017
Plant–microbiome interactions: from community assembly to plant health P Trivedi, JE Leach, SG Tringe, T Sa, BK Singh Nature reviews microbiology 18 (11), 607-621, 2020	835	2020
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa SL Lebeis, SH Paredes, DS Lundberg, N Breakfield, J Gehring, ... Science 349 (6250), 860-864, 2015	800	2015
Metagenomics: DNA sequencing of environmental samples SG Tringe, EM Rubin Nature reviews genetics 6 (11), 805-814, 2005	664	2005
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy CMK Sieber, AJ Probst, A Sharrar, BC Thomas, M Hess, SG Tringe, ... Nature microbiology 3 (7), 836-843, 2018	626	2018
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant MR Wagner, DS Lundberg, TG Del Rio, SG Tringe, JL Dangl, ... Nature communications 7 (1), 12151, 2016	607	2016
A renaissance for the pioneering 16S rRNA gene SG Tringe, P Hugenholtz Current opinion in microbiology 11 (5), 442-446, 2008	596	2008
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill OU Mason, TC Hazen, S Borglin, PSG Chain, EA Dubinsky, JL Fortney, ... The ISME journal 6 (9), 1715-1727, 2012	555	2012
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer Microbiome 2, 1-18, 2014	537	2014
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species D Coleman‐Derr, D Desgarennes, C Fonseca‐Garcia, S Gross, ... New Phytologist 209 (2), 798-811, 2016	509	2016
Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling CJ Castelle, KC Wrighton, BC Thomas, LA Hug, CT Brown, MJ Wilkins, ... Current biology 25 (6), 690-701, 2015	501	2015
Primer and platform effects on 16S rRNA tag sequencing J Tremblay, K Singh, A Fern, ES Kirton, S He, T Woyke, J Lee, F Chen, ... Frontiers in microbiology 6, 771, 2015	477	2015
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling LA Hug, CJ Castelle, KC Wrighton, BC Thomas, I Sharon, KR Frischkorn, ... Microbiome 1 (1), 1-17, 2013	425	2013
Quantitative phylogenetic assessment of microbial communities in diverse environments C Von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, ... science 315 (5815), 1126-1130, 2007	394	2007

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