| Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data CS Chin, DH Alexander, P Marks, AA Klammer, J Drake, C Heiner, ... Nature methods 10 (6), 563-569, 2013 | 4262 | 2013 |
| Nextstrain: real-time tracking of pathogen evolution J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ... Bioinformatics 34 (23), 4121-4123, 2018 | 2880 | 2018 |
| An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015 | 2348 | 2015 |
| Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition AJ Greaney, TN Starr, P Gilchuk, SJ Zost, E Binshtein, AN Loes, SK Hilton, ... Cell host & microbe 29 (1), 44-57. e9, 2021 | 1041 | 2021 |
| Resolving the complexity of the human genome using single-molecule sequencing MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ... Nature 517 (7536), 608-611, 2015 | 847 | 2015 |
| Discovery and genotyping of structural variation from long-read haploid genome sequence data J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ... Genome research 27 (5), 677-685, 2017 | 391 | 2017 |
| Global diversity, population stratification, and selection of human copy-number variation PH Sudmant, S Mallick, BJ Nelson, F Hormozdiari, N Krumm, ... Science 349 (6253), aab3761, 2015 | 385 | 2015 |
| Gibbon genome and the fast karyotype evolution of small apes L Carbone, R Alan Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ... Nature 513 (7517), 195-201, 2014 | 357 | 2014 |
| Long-read sequence assembly of the gorilla genome D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ... Science 352 (6281), aae0344, 2016 | 347 | 2016 |
| Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA TN Turner, F Hormozdiari, MH Duyzend, SA McClymont, PW Hook, ... The American Journal of Human Genetics 98 (1), 58-74, 2016 | 312 | 2016 |
| Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 295 | 2020 |
| Reconstructing complex regions of genomes using long-read sequencing technology J Huddleston, S Ranade, M Malig, F Antonacci, M Chaisson, L Hon, ... Genome research 24 (4), 688-696, 2014 | 285 | 2014 |
| Long-read sequencing and de novo assembly of a Chinese genome L Shi, Y Guo, C Dong, J Huddleston, H Yang, X Han, A Fu, Q Li, N Li, ... Nature communications 7 (1), 12065, 2016 | 283 | 2016 |
| Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation CT Watson, KM Steinberg, J Huddleston, RL Warren, M Malig, J Schein, ... The American Journal of Human Genetics 92 (4), 530-546, 2013 | 250 | 2013 |
| Evolution and diversity of copy number variation in the great ape lineage PH Sudmant, J Huddleston, CR Catacchio, M Malig, LDW Hillier, C Baker, ... Genome research 23 (9), 1373-1382, 2013 | 175 | 2013 |
| Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants JM Lee, J Huddleston, MB Doud, KA Hooper, NC Wu, T Bedford, ... Proceedings of the National Academy of Sciences 115 (35), E8276-E8285, 2018 | 170 | 2018 |
| Single haplotype assembly of the human genome from a hydatidiform mole KM Steinberg, VA Schneider, TA Graves-Lindsay, RS Fulton, R Agarwala, ... Genome research 24 (12), 2066-2076, 2014 | 161 | 2014 |
| Single haplotype assembly of the human genome from a hydatidiform mole KM Steinberg, VA Schneider, TA Graves-Lindsay, RS Fulton, R Agarwala, ... Genome research 24 (12), 2066-2076, 2014 | 161 | 2014 |
| The evolution and population diversity of human-specific segmental duplications MY Dennis, L Harshman, BJ Nelson, O Penn, S Cantsilieris, J Huddleston, ... Nature ecology & evolution 1 (3), 0069, 2017 | 145 | 2017 |
| denovo-db: a compendium of human de novo variants TN Turner, Q Yi, N Krumm, J Huddleston, K Hoekzema, HA F. Stessman, ... Nucleic acids research 45 (D1), D804-D811, 2017 | 128 | 2017 |
