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Nick Goldman
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Initial sequencing and comparative analysis of the mouse genome
AT Chinwalla, LL Cook, KD Delehaunty, GA Fewell, LA Fulton, RS Fulton, ...
Nature 420 (6915), 520-562, 2002
8394*2002
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ...
Nature 447 (7146), 799-816, 2007
58682007
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
S Whelan, N Goldman
Molecular Biology and Evolution 18 (5), 691-699, 2001
29112001
Codon-substitution models for heterogeneous selection pressure at amino acid sites
Z Yang, R Nielsen, N Goldman, AMK Pedersen
Genetics 155 (1), 431-449, 2000
25692000
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
N Goldman, Z Yang
Molecular Biology and Evolution 11 (5), 725-736, 1994
23381994
Likelihood-based tests of topologies in phylogenetics
N Goldman, JP Anderson, AG Rodrigo
Systematic Biology 49 (4), 652-670, 2000
12192000
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
12162011
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA
N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ...
Nature 494 (7435), 77-80, 2013
11002013
An algorithm for progressive multiple alignment of sequences with insertions
A Löytynoja, N Goldman
Proceedings of the National Academy of Sciences of the United States of …, 2005
10142005
Statistical tests of models of DNA substitution
N Goldman
Journal of Molecular Evolution 36 (2), 182-198, 1993
8721993
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
A Löytynoja, N Goldman
Science 320 (5883), 1632-1635, 2008
8602008
Insights into hominid evolution from the gorilla genome sequence
A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ...
Nature 483 (7388), 169-175, 2012
7972012
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
WSW Wong, Z Yang, N Goldman, R Nielsen
Genetics 168 (2), 1041-1051, 2004
6362004
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engstrom, T Steijger, B Sipos, GR Grant, A Kahles, G Raetsch, ...
NATURE METHODS 10 (12), 1185-+, 2013
5692013
Molecular phylogenetics: state-of-the-art methods for looking into the past
S Whelan, P Lio, N Goldman
TRENDS in Genetics 17 (5), 262-272, 2001
5192001
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
Z Yang, N Goldman, A Friday
Molecular biology and evolution 11 (2), 316-324, 1994
5191994
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
A Löytynoja, N Goldman
BMC bioinformatics 11 (1), 579, 2010
4492010
Models of molecular evolution and phylogeny
P Liò, N Goldman
Genome research 8 (12), 1233-1244, 1998
4401998
Genome sequencing of normal cells reveals developmental lineages and mutational processes
S Behjati, M Huch, R van Boxtel, W Karthaus, DC Wedge, AU Tamuri, ...
Nature 513 (7518), 422-425, 2014
3592014
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, ...
Genome research 13 (1), 13-26, 2003
3532003
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