Nick Goldman

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Ziheng YangRA Fisher Professor of Statistical Genetics, University College LondonVerified email at ucl.ac.uk
Simon WhelanNo longer in academiaVerified email at swedbank.se
Ari LöytynojaPI, Institute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
Tim MassinghamPrivateVerified email at nanoporetech.com
Botond SiposOxford Nanopore TechnologiesVerified email at nanoporetech.com
Nicola De MaioScientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), CambridgeVerified email at ebi.ac.uk
P. Lió, Pietro Lio, P. Lio, Pietro Liò, Pie...University of CambridgeVerified email at cam.ac.uk
Rasmus NielsenUC Berkeley, University of CopenhagenVerified email at bio.ku.dk
Jeffrey L. ThorneProfessor of Genetics and Statistics, North Carolina State UniversityVerified email at statgen.ncsu.edu
Christophe DessimozProf at UNIL and Joint Executive Director of SIBVerified email at unil.ch
Asif U TamuriUniversity College London (UCL)Verified email at ucl.ac.uk
Greg SlodkowiczThe Francis Crick InstituteVerified email at crick.ac.uk
Carolin KosiolLecturer in Bioinformatics, University of St AndrewsVerified email at st-andrews.ac.uk
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Paul BertoneBrown UniversityVerified email at brown.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Conor R. WalkerNew York Genome Center & Columbia UniversityVerified email at nygenome.org
Fabio PardiResearch Fellow, CNRS, FranceVerified email at lirmm.fr
Jennifer HarrowELIXIRVerified email at elixir-europe.org
Allen RodrigoThe School of Biological Sciences, The University of AucklandVerified email at auckland.ac.nz

Nick Goldman

EMBL-European Bioinformatics Institute

Verified email at ebi.ac.uk - Homepage

genome analysis evolution EMBL-EBI-Research-Group


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Initial sequencing and comparative analysis of the mouse genome AT Chinwalla, LL Cook, KD Delehaunty, GA Fewell, LA Fulton, RS Fulton, ... Nature 420 (6915), 520-562, 2002	7886*	2002
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007	5665	2007
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach S Whelan, N Goldman Molecular Biology and Evolution 18 (5), 691-699, 2001	2705	2001
Codon-substitution models for heterogeneous selection pressure at amino acid sites Z Yang, R Nielsen, N Goldman, AMK Pedersen Genetics 155 (1), 431-449, 2000	2483	2000
Codon-substitution models for heterogeneous selection pressure at amino acid sites Z Yang, R Nielsen, N Goldman, AMK Pedersen Genetics 155 (1), 431-449, 2000	2483	2000
A codon-based model of nucleotide substitution for protein-coding DNA sequences. N Goldman, Z Yang Molecular Biology and Evolution 11 (5), 725-736, 1994	2237	1994
Likelihood-based tests of topologies in phylogenetics N Goldman, JP Anderson, AG Rodrigo Systematic Biology 49 (4), 652-670, 2000	1192	2000
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1101	2011
An algorithm for progressive multiple alignment of sequences with insertions A Löytynoja, N Goldman Proceedings of the National Academy of Sciences of the United States of …, 2005	969	2005
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... Nature 494 (7435), 77-80, 2013	897	2013
Statistical tests of models of DNA substitution N Goldman Journal of Molecular Evolution 36 (2), 182-198, 1993	852	1993
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis A Löytynoja, N Goldman Science 320 (5883), 1632-1635, 2008	804	2008
Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012	753	2012
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites WSW Wong, Z Yang, N Goldman, R Nielsen Genetics 168 (2), 1041-1051, 2004	617	2004
Systematic evaluation of spliced alignment programs for RNA-seq data PG Engstrom, T Steijger, B Sipos, GR Grant, A Kahles, G Raetsch, ... NATURE METHODS 10 (12), 1185-+, 2013	525	2013
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Z Yang, N Goldman, A Friday Molecular biology and evolution 11 (2), 316-324, 1994	518	1994
Molecular phylogenetics: state-of-the-art methods for looking into the past S Whelan, P Lio, N Goldman TRENDS in Genetics 17 (5), 262-272, 2001	502	2001
Models of molecular evolution and phylogeny P Liò, N Goldman Genome research 8 (12), 1233-1244, 1998	411	1998
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser A Löytynoja, N Goldman BMC bioinformatics 11 (1), 579, 2010	379	2010
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, ... Genome research 13 (1), 13-26, 2003	346	2003

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