Julien Roux
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Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels
NE Banovich, X Lan, G McVicker, B Van de Geijn, JF Degner, JD Blischak, ...
PLOS Genetics 10 (9), e1004663, 2014
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
DF Simola, L Wissler, G Donahue, RM Waterhouse, M Helmkampf, ...
Genome research 23 (8), 1235-1247, 2013
Bgee: integrating and comparing heterogeneous transcriptome data among species
F Bastian, G Parmentier, J Roux, S Moretti, V Laudet, ...
Data Integration in the Life Sciences, 124-131, 2008
Patterns of positive selection in seven ant genomes
J Roux, E Privman, S Moretti, JT Daub, M Robinson-Rechavi, L Keller
Molecular biology and evolution 31 (7), 1661-1685, 2014
The genomic impact of 100 million years of social evolution in seven ant species
J Gadau, M Helmkampf, S Nygaard, J Roux, DF Simola, CR Smith, ...
Trends in Genetics, 2011
Developmental constraints on vertebrate genome evolution
J Roux, M Robinson-Rechavi
PLoS genetics 4 (12), e1000311, 2008
What to compare and how: Comparative transcriptomics for Evo‐Devo
J Roux, M Rosikiewicz, M Robinson‐Rechavi
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2015
Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication
J Roux, M Robinson-Rechavi
Genome Research 21 (3), 357-363, 2011
Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs
J Roux, M Gonzŕlez-Porta, M Robinson-Rechavi
Nucleic Acids Research 40 (13), 5890-5900, 2012
Evaluation of tools for long read RNA-seq splice-aware alignment
K Križanović, A Echchiki, J Roux, M Šikić
Bioinformatics, 2017
Molecular signaling in zebrafish development and the vertebrate phylotypic period
A Comte, J Roux, M Robinson‐Rechavi
Evolution & development 12 (2), 144-156, 2010
Long-lived T follicular helper cells retain plasticity and help sustain humoral immunity
M Künzli, D Schreiner, TC Pereboom, N Swarnalekha, LC Litzler, ...
Science Immunology 5 (45), 2020
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2015
A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues
BJ Pavlovic, LE Blake, J Roux, C Chavarria, Y Gilad
Scientific Reports 8 (1), 15312, 2018
Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates
J Roux, J Liu, M Robinson-Rechavi
Molecular biology and evolution 34 (11), 2773-2791, 2017
A comparison of gene expression and DNA methylation patterns across tissues and species
LE Blake, J Roux, I Hernando-Herraez, N Banovich, RG Perez, CJ Hsiao, ...
Genome Research, gr. 254904.119, 2020
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests
A Komljenovic, J Roux, J Wollbrett, M Robinson-Rechavi, FB Bastian
F1000Research 5, 2018
vHOG, a multispecies vertebrate ontology of homologous organs groups
A Niknejad, A Comte, G Parmentier, J Roux, FB Bastian, ...
Bioinformatics 28 (7), 1017-1020, 2012
An ontology to clarify homology-related concepts
J Roux, M Robinson-Rechavi
Trends in Genetics 26 (3), 99-102, 2010
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles
M Seppey, P Ioannidis, BC Emerson, C Pitteloud, M Robinson-Rechavi, ...
Genome biology 20 (1), 1-14, 2019
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