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Jennifer Becq
Jennifer Becq
Verified email at illumina.com
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Year
Analysis of circulating tumor DNA to monitor metastatic breast cancer
SJ Dawson, DWY Tsui, M Murtaza, H Biggs, OM Rueda, SF Chin, ...
New England Journal of Medicine 368 (13), 1199-1209, 2013
24442013
Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs
CT Saunders, WSW Wong, S Swamy, J Becq, LJ Murray, RK Cheetham
Bioinformatics 28 (14), 1811-1817, 2012
16812012
Factors influencing success of clinical genome sequencing across a broad spectrum of disorders
JC Taylor, HC Martin, S Lise, J Broxholme, JB Cazier, A Rimmer, ...
Nature genetics 47 (7), 717-726, 2015
3982015
Monitoring chronic lymphocytic leukemia progression by whole genome sequencing reveals heterogeneous clonal evolution patterns
A Schuh, J Becq, S Humphray, A Alexa, A Burns, R Clifford, SM Feller, ...
Blood, The Journal of the American Society of Hematology 120 (20), 4191-4196, 2012
3792012
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer
EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ...
Cell 148 (4), 780-791, 2012
3552012
Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma
CS Ross-Innes, J Becq, A Warren, RK Cheetham, H Northen, ...
Nature genetics 47 (9), 1038-1046, 2015
2962015
Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis
CU Köser, JM Bryant, J Becq, ME Török, MJ Ellington, MA Marti-Renom, ...
New England journal of medicine 369 (3), 290-292, 2013
2622013
Statistical inference of the time-varying structure of gene-regulation networks
S Lebre, J Becq, F Devaux, MPH Stumpf, G Lelandais
BMC systems biology 4, 1-16, 2010
2142010
Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli
J Becq, MC Gutierrez, V Rosas-Magallanes, J Rauzier, B Gicquel, ...
Molecular biology and evolution 24 (8), 1861-1871, 2007
1812007
Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project
P Robbe, N Popitsch, SJL Knight, P Antoniou, J Becq, M He, A Kanapin, ...
Genetics in Medicine 20 (10), 1196-1205, 2018
1422018
Genomic variation among contemporary Pseudomonas aeruginosa isolates from chronically infected cystic fibrosis patients
JCS Chung, J Becq, L Fraser, O Schulz-Trieglaff, NJ Bond, J Foweraker, ...
Journal of bacteriology 194 (18), 4857-4866, 2012
1082012
Horizontally acquired genomic islands in the tubercle bacilli
J Jang, J Becq, B Gicquel, P Deschavanne, O Neyrolles
Trends in microbiology 16 (7), 303-308, 2008
792008
A benchmark of parametric methods for horizontal transfers detection
J Becq, C Churlaud, P Deschavanne
PLoS One 5 (4), e9989, 2010
782010
Rapid single-colony whole-genome sequencing of bacterial pathogens
CU Köser, LJ Fraser, A Ioannou, J Becq, MJ Ellington, MTG Holden, ...
Journal of Antimicrobial Chemotherapy 69 (5), 1275-1281, 2014
752014
Whole-genome sequencing of chronic lymphocytic leukaemia reveals distinct differences in the mutational landscape between IgHV mut and IgHV unmut subgroups
A Burns, R Alsolami, J Becq, B Stamatopoulos, A Timbs, D Bruce, ...
Leukemia 32 (2), 332-342, 2018
712018
Whole genome sequencing of chronic lymphocytic leukemia reveals distinct differences in the mutational landscape between IgHV (mut) and IgHV (unmut) subgroups.
A Burns, R Alsolami, J Becq, A Timbs, D Bruce, P Robbe, D Vavoulis, ...
Leukemia, 2017
712017
Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus
LV Mallet, J Becq, P Deschavanne
BMC genomics 11, 1-13, 2010
512010
Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome
F Favero, N McGranahan, M Salm, NJ Birkbak, JZ Sanborn, SC Benz, ...
Annals of Oncology 26 (5), 880-887, 2015
432015
Epigenetic regulator genes direct lineage switching in MLL/AF4 leukemia
R Tirtakusuma, K Szoltysek, P Milne, VV Grinev, A Ptasinska, PS Chin, ...
Blood, The Journal of the American Society of Hematology 140 (17), 1875-1890, 2022
292022
Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma
EA Raiber, D Beraldi, S Martínez Cuesta, GR McInroy, Z Kingsbury, ...
NPJ Genomic Medicine 2 (1), 6, 2017
292017
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