Sofie Salama
Sofie Salama
Research Scientist, Dept. Biomolecular Engineering, UC Santa Cruz Genomics Institute, HHMI
Verified email at ucsc.edu
TitleCited byYear
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 155 (2), 462-477, 2013
23862013
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113, 2013
23182013
Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas
Cancer Genome Atlas Research Network
New England Journal of Medicine 372 (26), 2481-2498, 2015
12462015
Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E
DC Fingar, S Salama, C Tsou, ED Harlow, J Blenis
Genes & development 16 (12), 1472-1487, 2002
10862002
An RNA gene expressed during cortical development evolved rapidly in humans
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167-172, 2006
9252006
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ...
Cell 164 (3), 550-563, 2016
7912016
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ...
Nature 441 (7089), 87-90, 2006
4972006
Forces shaping the fastest evolving regions in the human genome
KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ...
PLoS genetics 2 (10), 2006
4012006
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ...
Nature methods 7 (12), 995, 2010
2962010
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
T Wang, J Zeng, CB Lowe, RG Sellers, SR Salama, M Yang, SM Burgess, ...
Proceedings of the National Academy of Sciences 104 (47), 18613-18618, 2007
2882007
Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains
M Askenazi, EM Driggers, DA Holtzman, TC Norman, S Iverson, ...
Nature biotechnology 21 (2), 150-156, 2003
2332003
Human genome ultraconserved elements are ultraselected
S Katzman, AD Kern, G Bejerano, G Fewell, L Fulton, RK Wilson, ...
Science 317 (5840), 915-915, 2007
2282007
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ...
Nature 516 (7530), 242-245, 2014
2182014
Comprehensive molecular characterization of pheochromocytoma and paraganglioma
L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ...
Cancer cell 31 (2), 181-193, 2017
1942017
Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR
S Beyhan, K Bilecen, SR Salama, C Casper-Lindley, FH Yildiz
Journal of bacteriology 189 (2), 388-402, 2007
1452007
Combinatorial roles for pRB, p107, and p130 in E2F-mediated cell cycle control
M Classon, S Salama, C Gorka, R Mulloy, P Braun, E Harlow
Proceedings of the National Academy of Sciences 97 (20), 10820-10825, 2000
1292000
G1 cyclin degradation: the PEST motif of yeast Cln2 is necessary, but not sufficient, for rapid protein turnover.
SR Salama, KB Hendricks, J Thorner
Molecular and cellular biology 14 (12), 7953-7966, 1994
1231994
Three periods of regulatory innovation during vertebrate evolution
CB Lowe, M Kellis, A Siepel, BJ Raney, M Clamp, SR Salama, ...
science 333 (6045), 1019-1024, 2011
1142011
Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ...
Cell 173 (6), 1356-1369. e22, 2018
842018
Cloning and characterization of Kluyveromyces lactis SEC14, a gene whose product stimulates Golgi secretory function in Saccharomyces cerevisiae.
SR Salama, AE Cleves, DE Malehorn, EA Whitters, VA Bankaitis
Journal of bacteriology 172 (8), 4510-4521, 1990
731990
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Articles 1–20