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Ilka Hoof
Ilka Hoof
Research Scientist, Denmark
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Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
25912014
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
16902014
NetMHCpan, a method for MHC class I binding prediction beyond humans
I Hoof, B Peters, J Sidney, LE Pedersen, A Sette, O Lund, S Buus, ...
Immunogenetics 61, 1-13, 2009
8052009
The immune epitope database 2.0
R Vita, L Zarebski, JA Greenbaum, H Emami, I Hoof, N Salimi, R Damle, ...
Nucleic acids research 38 (suppl_1), D854-D862, 2010
7522010
Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution
C Rausch, I Hoof, T Weber, W Wohlleben, DH Huson
BMC evolutionary biology 7, 1-15, 2007
4012007
Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
E Ntini, AI Järvelin, J Bornholdt, Y Chen, M Boyd, M Jørgensen, ...
Nature structural & molecular biology 20 (8), 923-928, 2013
3002013
CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters
T Weber, C Rausch, P Lopez, I Hoof, V Gaykova, DH Huson, ...
Journal of biotechnology 140 (1-2), 13-17, 2009
2062009
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
1402014
State of the art and challenges in sequence based T-cell epitope prediction
C Lundegaard, I Hoof, O Lund, M Nielsen
Immunome Research 6, 1-14, 2010
1132010
Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation
M Rönnerblad, R Andersson, T Olofsson, I Douagi, M Karimi, S Lehmann, ...
Blood, The Journal of the American Society of Hematology 123 (17), e79-e89, 2014
942014
MHC motif viewer
N Rapin, I Hoof, O Lund, M Nielsen
Immunogenetics 60, 759-765, 2008
722008
Comprehensive analysis of the naturally processed peptide repertoire: differences between HLA-A and B in the immunopeptidome
IMM Schellens, I Hoof, HD Meiring, SNM Spijkers, MCM Poelen, ...
PloS one 10 (9), e0136417, 2015
612015
Allergen-specific IgG+ memory B cells are temporally linked to IgE memory responses
I Hoof, V Schulten, JA Layhadi, T Stranzl, LH Christensen, SH de la Mata, ...
Journal of Allergy and Clinical Immunology 146 (1), 180-191, 2020
592020
HLA class I allele promiscuity revisited
X Rao, I Hoof, AICA Fontaine Costa, D van Baarle, C Keşmir
Immunogenetics 63, 691-701, 2011
592011
Identification of CD8+ T cell epitopes in the West Nile virus polyprotein by reverse-immunology using NetCTL
MV Larsen, A Lelic, R Parsons, M Nielsen, I Hoof, K Lamberth, MB Loeb, ...
PloS one 5 (9), e12697, 2010
572010
Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity
I Hoof, CL Pérez, M Buggert, RKL Gustafsson, M Nielsen, O Lund, ...
The Journal of Immunology 184 (9), 5383-5391, 2010
532010
CD8+ TCR repertoire formation is guided primarily by the peptide component of the antigenic complex
D Koning, AI Costa, I Hoof, JJ Miles, NM Nanlohy, K Ladell, KK Matthews, ...
The Journal of Immunology 190 (3), 931-939, 2013
522013
Proteome sampling by the HLA class I antigen processing pathway
I Hoof, D van Baarle, WH Hildebrand, C Keşmir
PLoS computational biology 8 (5), e1002517, 2012
452012
The MHC motif viewer: a visualization tool for MHC binding motifs
N Rapin, I Hoof, O Lund, M Nielsen
Current protocols in immunology 88 (1), 18.17. 1-18.17. 13, 2010
412010
Strong and frequent T‐cell responses to the minor allergen Phl p 12 in Spanish patients IgE‐sensitized to profilins
G Lund, S Brand, T Ramos, L Jimeno, P Boissy, F Vega, M Arina, ...
Allergy 73 (5), 1013-1021, 2018
292018
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