Jose M G Izarzugaza
Jose M G Izarzugaza
Novo Nordisk, Bioinformatics and Data Mining Department
Bekræftet mail på novonordisk.com - Startside
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Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
5562020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
2232020
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
S Besenbacher, S Liu, JMG Izarzugaza, J Grove, K Belling, J Bork-Jensen, ...
Nature communications 6, 5969, 2015
1402015
Tumor Mutation Burden Forecasts Outcome in Ovarian Cancer with BRCA1 or BRCA2 Mutations
NJ Birkbak, B Kochupurakkal, JMG Izarzugaza, AC Eklund, Y Li, J Liu, ...
PLOS ONE 8 (11), e80023, 2013
1202013
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
L Maretty, JM Jensen, B Petersen, JA Sibbesen, S Liu, P Villesen, L Skov, ...
Nature 548 (7665), 87, 2017
1092017
Assessment of intramolecular contact predictions for CASP7
JMG Izarzugaza, O Graña, ML Tress, A Valencia, ND Clarke
Proteins: Structure, Function, and Bioinformatics 69 (S8), 152-158, 2007
902007
Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8
I Ezkurdia, O Grana, JMG Izarzugaza, ML Tress
Proteins: Structure, Function, and Bioinformatics 77 (S9), 196-209, 2009
752009
Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing
S Mollerup, J Friis-Nielsen, L Vinner, TA Hansen, SR Richter, H Fridholm, ...
Journal of clinical microbiology 54 (4), 980-987, 2016
702016
Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries
M Asplund, KR Kjartansdóttir, S Mollerup, L Vinner, H Fridholm, ...
Clinical Microbiology and Infection, 2019
602019
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
J Carlevaro-Fita, A Lanzós, L Feuerbach, C Hong, D Mas-Ponte, ...
Communications biology 3 (1), 1-16, 2020
532020
How compelling are the data for Epstein–Barr virus being a trigger for systemic lupus and other autoimmune diseases?
A Draborg, JMG Izarzugaza, G Houen
Current opinion in rheumatology 28 (4), 398-404, 2016
492016
Pathway and network analysis of more than 2500 whole cancer genomes
MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ...
Nature Communications 11 (1), 1-17, 2020
452020
Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nature communications 11 (1), 1-16, 2020
422020
From cancer genomes to cancer models: bridging the gaps
A Baudot, FX Real, JMG Izarzugaza, A Valencia
EMBO reports 10 (4), 359-366, 2009
362009
Extraction of human kinase mutations from literature, databases and genotyping studies
M Krallinger, JMG Izarzugaza, C Rodriguez-Penagos, A Valencia
BMC bioinformatics 10 (8), S1, 2009
352009
Investigation of human cancers for retrovirus by low-stringency target enrichment and high-throughput sequencing
L Vinner, T Mourier, J Friis-Nielsen, R Gniadecki, K Dybkaer, J Rosenberg, ...
Scientific reports 5, 13201, 2015
322015
Cancer‐associated mutations are preferentially distributed in protein kinase functional sites
JMG Izarzugaza, OC Redfern, CA Orengo, A Valencia
Proteins: Structure, Function, and Bioinformatics 77 (4), 892-903, 2009
322009
Prediction of protein interaction based on similarity of phylogenetic trees
F Pazos, D Juan, JM Izarzugaza, E Leon, A Valencia
Methods Mol Biol 484, 523-535, 2008
302008
TSEMA: interactive prediction of protein pairings between interacting families
JMG Izarzugaza, D Juan, C Pons, JAG Ranea, A Valencia, F Pazos
Nucleic acids research 34 (suppl_2), W315-W319, 2006
282006
Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion
L Skov, MH Schierup, Danish Pan Genome Consortium
PLoS Genetics 13 (8), e1006834, 2017
272017
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Artikler 1–20